View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18556_low_4 (Length: 562)
Name: NF18556_low_4
Description: NF18556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18556_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 8573516 - 8574036
Alignment:
| Q |
20 |
caaaccacactgagaatgtaactccttcaaattctaggggtacaaagagaactatgcagccaactaaaatttcaagaaaaaagaaatgtgcacaaaccca |
119 |
Q |
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| T |
8573516 |
caaatcacactgagaatgtaactccttcaaattctaggggtacaaagagaactatgcagccaactaaaatttcaagaaaaaagaaatgtgcacaaaccca |
8573615 |
T |
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| Q |
120 |
cgcaccattgataattccatctgacactgttcagactcatactaaccaagccactcaacctccacctcgaactaaacctcgaactaaacttaatcgacct |
219 |
Q |
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| T |
8573616 |
cgcaccattgataattccatctgacactgttcagactcatgctaaccaagccactcaacctccacctcgaactaaacctcgaactaaatttaatcgacct |
8573715 |
T |
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| Q |
220 |
cggcctcctaaagctctaactcgacttcaacttcgaaatcaatctcaacaatcccaacctcaacttttcctgcaaccccaacccacccaatcacaacgtc |
319 |
Q |
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| T |
8573716 |
cggccccctaaagctctaactcgacttcaacttcgaaatcaatctcaacaatcccaacctcaacttttcctgcaaccccaacccacccaaccacaacgtc |
8573815 |
T |
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| Q |
320 |
gcctgcaaccccagcccactcaacctcaagcaccgcctcaactccgtcggaaaccccaacccactcaaggccgatcacagcgtcaactcgacctgcaacc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8573816 |
gcctgcaaccccagcccactcaacctcaagcaccgcctcaactccgtcggaaaccccaacccactcaaggccgatcacagcgtcaacttgacctgcaacc |
8573915 |
T |
|
| Q |
420 |
ccaacccactcaacctcaaccacaacctcagctccgcatgcgaccccaaccaactcaacctcgaccacaacctcaaatccgcttgccaccccaacccact |
519 |
Q |
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| T |
8573916 |
ccaacccactcaacctcaactacaacctcaactccgcatgcgaccccaaccaactcaacctcgaccacaacctcaaatccgcttgcaaccccaacccact |
8574015 |
T |
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| Q |
520 |
caacgcacctcacctccacct |
540 |
Q |
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|||| ||| |||||||||||| |
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| T |
8574016 |
caacacacgtcacctccacct |
8574036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 8604337 - 8604391
Alignment:
| Q |
402 |
tcaactcgacctgcaaccccaacccactcaacctcaaccacaacctcagctccgc |
456 |
Q |
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||||||| |||||||||||||||||||| |||||| ||||||||| | |||||| |
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| T |
8604337 |
tcaactccacctgcaaccccaacccactgaacctcggccacaacctaaactccgc |
8604391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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