View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18556_low_8 (Length: 381)
Name: NF18556_low_8
Description: NF18556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18556_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 9575153 - 9575528
Alignment:
| Q |
1 |
acattgtttacaaagacgatatagcacagccatatcaagataattcaaacatcaaaaggtcaagttatcaagcaaaacnnnnnnnnggataaaagtttcc |
100 |
Q |
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| T |
9575153 |
acattgtttacaaagacgatctagcacagccatatcaagataattcaaacatcaaaaggtcaagttatcaagcaaattttttttttggataaaagtttcc |
9575252 |
T |
|
| Q |
101 |
ctaattccaagtgaaggtaatagtgcattttagcaaacaatacagattctctagaatcatgagacataagagtcatcaattcaacttatgtacattgcat |
200 |
Q |
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|||||||||| | |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9575253 |
ctaattccaaataaaggtaatagtgcattttggcaaacaatacagattctctaaaatcatgagacataagagtcatcaattcagcttatgtacattgcat |
9575352 |
T |
|
| Q |
201 |
agttacacaagaaaaacatagctaatcaatatcagttacttggagcaagtttcggcatattcctaattagaattgattttgcctctaaagttgattctaa |
300 |
Q |
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| T |
9575353 |
agttacacaagaaaaacatatctaatcaatatcagttacttggtgcaagtttcggcatattcctaattagaattgattttgcctctaaagttgattctaa |
9575452 |
T |
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| Q |
301 |
tttaacttgaagtcataatttatagcttttgcctccaaacatgatttttacatttaaattcacggttcatatcact |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9575453 |
tttaacttgaagtcataatttatagcttttgcctccaaacatgatttttacatttaaattcacggttcaaatcact |
9575528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 38845759 - 38845791
Alignment:
| Q |
266 |
attagaattgattttgcctctaaagttgattct |
298 |
Q |
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| T |
38845759 |
attagaattgattttgcctctatagttgattct |
38845791 |
T |
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