View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18557_low_1 (Length: 666)
Name: NF18557_low_1
Description: NF18557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18557_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 335 - 649
Target Start/End: Original strand, 8315998 - 8316319
Alignment:
| Q |
335 |
accatcatagcatgtgttgattattatattagactatgattcagcgaca-------ccagacacgatatggacattactgataatatgatataacgcctg |
427 |
Q |
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| T |
8315998 |
accatcacagcatgtgttgattattatattagactatgattcaccgacaccagacaccagacacgacatggacattactgataatatgatataaagcctg |
8316097 |
T |
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| Q |
428 |
aacattcctaatacaggagtttatcttgtagaacataatatgcaaatgatctcaagatatgtaatttaagtttcaaagataccaaggaggacttatacta |
527 |
Q |
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| T |
8316098 |
aacattcctaatacatgagtttatcttgtagaacataatatgcaaatgatctcaagatatgtaatttaagtttcaaagataccaaggaggacttatacta |
8316197 |
T |
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| Q |
528 |
actggtattgaaattgcagtaagtaacatggaggctggttcaagtaaggttcacaagagtactcaaatggcaagtgtaattgaagaagacacgatcaaca |
627 |
Q |
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| T |
8316198 |
actggtattgaaattgcagtaagtaacatggaggctggttcaagtaaggttcacaagagtactcaaatggcaagtgtaattgaagaagacacgatcaaca |
8316297 |
T |
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| Q |
628 |
gcaagctacctgaatcacttat |
649 |
Q |
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| T |
8316298 |
gcaagctacctgaatcacttat |
8316319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 8315742 - 8315913
Alignment:
| Q |
78 |
tggggttaacacgttttttagataaaaatggcccaaattggnnnnnnnnnnnnnacaaaatgaatttggtaaaaacaaaagagtctcaagtttgaaccct |
177 |
Q |
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| T |
8315742 |
tggggttaacccgttttttagataaaaatggcccaaattggttttttagtttttacaaaatgaatttggcaaaaacaaaagagtctcaagtttgaaccct |
8315841 |
T |
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| Q |
178 |
gcggcgtcacagtctcaaattctgaacgagatatgaccgatcaggtattattgacttgtcaatcattctatag |
250 |
Q |
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| T |
8315842 |
gcggcgtcacagtctcaaattctgaacgaga-atgaccgatcaggtattattgacttgtcaatcattctatag |
8315913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8315652 - 8315687
Alignment:
| Q |
1 |
ttcaatctggattagtaaatttggaggggtataatt |
36 |
Q |
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| T |
8315652 |
ttcaatctggattagtaaatttggaggggtataatt |
8315687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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