View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18557_low_2 (Length: 353)
Name: NF18557_low_2
Description: NF18557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18557_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 52033943 - 52034209
Alignment:
| Q |
10 |
atcatcaacttcaatcttcccgaactggaaaggaagacattcacacaagattgatgaagaagtataaagacatacctaattggtggtttcatgttacgct |
109 |
Q |
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| T |
52033943 |
atcatcaacttcaatcttcccgaactggaaaggaagacattcacacaagattgatgaagaagtataaagacatacctaattggtggtttcatgttacgct |
52034042 |
T |
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| Q |
110 |
tgtggtttcatttttacttgcacttgcattgtgtattttcatgaaagaagagatacaaatgccatggtgggctctcatctttgcttctggacttgcactc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034043 |
tgtggtttcatttttacttgcacttgcattgtgtattttcaagaaagaagagatacaaatgccatggtgggctctcatctttgcttctggacttgcactc |
52034142 |
T |
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| Q |
210 |
atttttactcttcccgttgccatcataactgccaccactaatcaggtacgtacgcttcattccctca |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034143 |
atttttactcttcccgttgccatcataactgccaccactaatcaggtacgtacgcttcattccctca |
52034209 |
T |
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