View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18558_high_12 (Length: 208)

Name: NF18558_high_12
Description: NF18558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18558_high_12
NF18558_high_12
[»] chr7 (2 HSPs)
chr7 (104-191)||(11098940-11099027)
chr7 (9-75)||(11098849-11098915)
[»] chr6 (2 HSPs)
chr6 (104-191)||(17998302-17998389)
chr6 (9-75)||(17998414-17998480)
[»] chr8 (1 HSPs)
chr8 (35-71)||(36283417-36283453)
[»] chr5 (1 HSPs)
chr5 (35-71)||(40571576-40571612)
[»] chr1 (1 HSPs)
chr1 (35-71)||(19913083-19913119)
[»] chr3 (1 HSPs)
chr3 (112-189)||(6560514-6560591)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 11098940 - 11099027
Alignment:
Q  104 actccttcaagaatgaaaaagagttgaatcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatattt 191  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098940 actccttcaagaatgaaaaagagttgagtcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatattt 11099027  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 11098849 - 11098915
Alignment:
Q  9 gaagaatatagaaaatagtaataacaaaatctgtaagtcattcatggccactggaattcaatactaa 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  11098849 gaagaatatagaaaatagtaataacaaaatctgtaagtcattcatggtcaatggaattcaatactaa 11098915  T

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Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 17998389 - 17998302
Alignment:
Q  104 actccttcaagaatgaaaaagagttgaatcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatattt 191  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998389 actccttcaagaatgaaaaagagttgagtcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatattt 17998302  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 17998480 - 17998414
Alignment:
Q  9 gaagaatatagaaaatagtaataacaaaatctgtaagtcattcatggccactggaattcaatactaa 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  17998480 gaagaatatagaaaatagtaataacaaaatctgtaagtcattcatggtcaatggaattcaatactaa 17998414  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 36283453 - 36283417
Alignment:
Q  35 aaatctgtaagtcattcatggccactggaattcaata 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  36283453 aaatctgtaagtcattcatggccactggaattcaata 36283417  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 40571612 - 40571576
Alignment:
Q  35 aaatctgtaagtcattcatggccactggaattcaata 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  40571612 aaatctgtaagtcattcatggccactggaattcaata 40571576  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 19913119 - 19913083
Alignment:
Q  35 aaatctgtaagtcattcatggccactggaattcaata 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  19913119 aaatctgtaagtcattcatggccactggaattcaata 19913083  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 6560591 - 6560514
Alignment:
Q  112 aagaatgaaaaagagttgaatcagaagtttctcatagtacagaaaactagca-tatgaaactaattgtttgttctatat 189  Q
    |||||||||||||| ||||||   |||||||||||||||||  ||||||||| || |||||||||||||||| ||||||    
T  6560591 aagaatgaaaaagacttgaatgt-aagtttctcatagtacaacaaactagcattacgaaactaattgtttgtactatat 6560514  T

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