View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18558_high_5 (Length: 373)
Name: NF18558_high_5
Description: NF18558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18558_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 6241709 - 6241800
Alignment:
| Q |
29 |
tttcatagctatcttctaaaaacaggtgactagataattataatgttatagtcattcaattttatttgcaaaatggaaatattaaaccgata |
120 |
Q |
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| T |
6241709 |
tttcaaagctatcttcaaaaaacaggtgataagataattataatgttaaagtcattcatttttatttgcaaaatggaaatattaaaccgata |
6241800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 6212685 - 6212750
Alignment:
| Q |
29 |
tttcatagctatcttctaaaaacaggtgactagataattataatgttatagtcattcaattttatt |
94 |
Q |
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| T |
6212685 |
tttcaaagctatcttcaaaaaacaggtgataagataattataatgttaaagtcattcatttttatt |
6212750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 6241612 - 6241677
Alignment:
| Q |
29 |
tttcatagctatcttctaaaaacaggtgactagataattataatgttatagtcattcaattttatt |
94 |
Q |
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| T |
6241612 |
tttcaaagctatcttcaaaaaacaggtgataagataattataatgttaaagtcattcatttttatt |
6241677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 8368659 - 8368770
Alignment:
| Q |
183 |
gggattgcttgagctactgccttgattaaagtttccttcccggcacgagaaagacatttttccttccatcccttgatattcttatgcactctctcttgga |
282 |
Q |
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| T |
8368659 |
gggatagcctgagcaactgctttgattaaagtttctttcccagcacgggagagacatttctctttccagcctttgatcttcttccacactctctcttgga |
8368758 |
T |
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| Q |
283 |
aaaatgagaaaa |
294 |
Q |
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| T |
8368759 |
caaaggagaaaa |
8368770 |
T |
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