View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18558_low_1 (Length: 609)

Name: NF18558_low_1
Description: NF18558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18558_low_1
NF18558_low_1
[»] chr2 (37 HSPs)
chr2 (19-593)||(19073162-19073736)
chr2 (49-359)||(41643910-41644227)
chr2 (42-359)||(6177813-6178135)
chr2 (26-357)||(18779078-18779409)
chr2 (83-357)||(15650888-15651168)
chr2 (59-359)||(18059066-18059372)
chr2 (51-359)||(41713202-41713513)
chr2 (38-359)||(18947293-18947608)
chr2 (132-357)||(27138798-27139028)
chr2 (199-399)||(34441773-34441970)
chr2 (125-397)||(42005390-42005664)
chr2 (41-269)||(39788297-39788530)
chr2 (42-181)||(19093676-19093815)
chr2 (211-392)||(30844850-30845033)
chr2 (48-191)||(34441573-34441716)
chr2 (224-326)||(58097-58198)
chr2 (118-305)||(38249901-38250094)
chr2 (42-181)||(7565511-7565652)
chr2 (211-399)||(43446320-43446511)
chr2 (38-186)||(18514415-18514563)
chr2 (49-181)||(32652621-32652753)
chr2 (257-343)||(22963458-22963544)
chr2 (211-331)||(7553420-7553540)
chr2 (125-181)||(17244840-17244896)
chr2 (47-181)||(59395-59529)
chr2 (257-343)||(22997933-22998019)
chr2 (211-328)||(32651906-32652023)
chr2 (136-181)||(40912471-40912516)
chr2 (279-348)||(45414326-45414395)
chr2 (310-358)||(39788538-39788586)
chr2 (297-343)||(38255549-38255595)
chr2 (214-261)||(40913164-40913211)
chr2 (47-181)||(6357043-6357177)
chr2 (368-398)||(31861895-31861925)
chr2 (220-285)||(6348832-6348897)
chr2 (370-399)||(31570909-31570938)
chr2 (136-181)||(43445342-43445387)
[»] chr5 (34 HSPs)
chr5 (38-399)||(22616493-22616855)
chr5 (49-358)||(36055569-36055883)
chr5 (40-359)||(31878421-31878747)
chr5 (65-358)||(41417289-41417588)
chr5 (47-358)||(10237453-10237768)
chr5 (26-331)||(33163579-33163890)
chr5 (39-357)||(21320791-21321114)
chr5 (38-315)||(27579110-27579391)
chr5 (211-344)||(25653637-25653770)
chr5 (33-179)||(12080412-12080558)
chr5 (214-329)||(10053291-10053406)
chr5 (211-329)||(12081129-12081248)
chr5 (211-331)||(33752910-33753030)
chr5 (213-343)||(26411351-26411481)
chr5 (51-181)||(29766498-29766628)
chr5 (47-163)||(25654589-25654704)
chr5 (38-181)||(33848030-33848173)
chr5 (211-343)||(33848549-33848681)
chr5 (42-181)||(8762883-8763022)
chr5 (42-181)||(13888329-13888468)
chr5 (59-181)||(13381123-13381245)
chr5 (211-331)||(13887307-13887427)
chr5 (211-286)||(21266130-21266205)
chr5 (211-336)||(13380560-13380685)
chr5 (43-181)||(10053820-10053952)
chr5 (47-181)||(26412052-26412186)
chr5 (59-172)||(3014672-3014785)
chr5 (211-331)||(8777275-8777395)
chr5 (59-181)||(33752412-33752534)
chr5 (61-181)||(12164016-12164136)
chr5 (211-251)||(25521705-25521745)
chr5 (368-399)||(22974227-22974258)
chr5 (220-331)||(25513841-25513952)
chr5 (368-398)||(15724490-15724520)
[»] chr3 (36 HSPs)
chr3 (26-358)||(32180422-32180756)
chr3 (38-397)||(19606596-19606961)
chr3 (40-359)||(38392313-38392638)
chr3 (42-399)||(40640317-40640683)
chr3 (40-358)||(49359313-49359637)
chr3 (42-359)||(7568413-7568729)
chr3 (59-399)||(45879191-45879547)
chr3 (132-357)||(44880831-44881061)
chr3 (38-303)||(26000626-26000897)
chr3 (38-398)||(47930348-47930714)
chr3 (26-298)||(7758106-7758372)
chr3 (38-309)||(51878203-51878474)
chr3 (238-331)||(53811865-53811958)
chr3 (47-175)||(42664014-42664142)
chr3 (211-338)||(42204405-42204530)
chr3 (240-343)||(4556595-4556702)
chr3 (47-181)||(5125442-5125575)
chr3 (42-181)||(48154374-48154513)
chr3 (211-324)||(43485384-43485497)
chr3 (47-181)||(29923057-29923191)
chr3 (47-181)||(29972210-29972344)
chr3 (71-181)||(36689674-36689784)
chr3 (33-181)||(11019700-11019847)
chr3 (211-343)||(54606760-54606892)
chr3 (42-103)||(31706507-31706568)
chr3 (279-343)||(18272154-18272218)
chr3 (211-275)||(47870313-47870377)
chr3 (211-328)||(48155075-48155192)
chr3 (119-181)||(12121217-12121279)
chr3 (280-343)||(5124726-5124789)
chr3 (368-399)||(7327638-7327669)
chr3 (214-260)||(11018554-11018600)
chr3 (116-178)||(40744200-40744262)
chr3 (63-181)||(47871210-47871328)
chr3 (43-76)||(23165310-23165343)
chr3 (211-328)||(29895933-29896050)
[»] chr1 (23 HSPs)
chr1 (47-399)||(13876611-13876968)
chr1 (26-359)||(16127558-16127893)
chr1 (59-343)||(15964154-15964444)
chr1 (26-355)||(27118372-27118703)
chr1 (79-358)||(10758024-10758309)
chr1 (199-359)||(16132513-16132673)
chr1 (26-358)||(25943237-25943573)
chr1 (38-181)||(16135545-16135688)
chr1 (125-328)||(31804854-31805063)
chr1 (211-399)||(421387-421579)
chr1 (47-189)||(47554968-47555111)
chr1 (211-329)||(21263907-21264025)
chr1 (41-181)||(3120548-3120688)
chr1 (212-348)||(17695870-17696012)
chr1 (47-181)||(422205-422339)
chr1 (49-161)||(5500596-5500707)
chr1 (211-340)||(28012123-28012253)
chr1 (50-181)||(28012925-28013056)
chr1 (284-344)||(34491440-34491500)
chr1 (47-88)||(4146712-4146753)
chr1 (370-399)||(4964067-4964096)
chr1 (43-76)||(42663251-42663284)
chr1 (33-89)||(26970835-26970891)
[»] chr8 (18 HSPs)
chr8 (38-341)||(3038462-3038770)
chr8 (42-355)||(4108602-4108918)
chr8 (40-359)||(7290757-7291082)
chr8 (38-325)||(18756350-18756642)
chr8 (40-253)||(23176472-23176690)
chr8 (129-355)||(6267279-6267508)
chr8 (33-191)||(28220711-28220869)
chr8 (47-186)||(34685992-34686131)
chr8 (212-342)||(35735844-35735973)
chr8 (211-331)||(1879088-1879208)
chr8 (224-314)||(30380989-30381079)
chr8 (211-331)||(1835247-1835367)
chr8 (238-341)||(34463472-34463575)
chr8 (43-189)||(30650923-30651078)
chr8 (288-359)||(23176704-23176773)
chr8 (308-359)||(8151371-8151422)
chr8 (132-181)||(1872689-1872738)
chr8 (43-76)||(5018554-5018587)
[»] scaffold0200 (1 HSPs)
scaffold0200 (47-399)||(24510-24866)
[»] scaffold0050 (1 HSPs)
scaffold0050 (50-342)||(5645-5941)
[»] chr7 (16 HSPs)
chr7 (40-359)||(22954998-22955322)
chr7 (33-357)||(49002266-49002594)
chr7 (40-355)||(4618440-4618761)
chr7 (42-398)||(23402059-23402419)
chr7 (50-359)||(37853990-37854304)
chr7 (77-355)||(5781560-5781841)
chr7 (20-357)||(7742959-7743313)
chr7 (86-350)||(8133290-8133560)
chr7 (38-359)||(4902378-4902685)
chr7 (211-338)||(19786343-19786470)
chr7 (125-269)||(40382016-40382167)
chr7 (42-181)||(25470643-25470782)
chr7 (47-181)||(8759459-8759592)
chr7 (26-181)||(10674928-10675085)
chr7 (211-295)||(8758392-8758476)
chr7 (238-329)||(47190127-47190218)
[»] chr4 (28 HSPs)
chr4 (59-358)||(2266561-2266865)
chr4 (38-357)||(17612375-17612699)
chr4 (42-359)||(9743626-9743948)
chr4 (205-354)||(1012339-1012489)
chr4 (38-315)||(2570560-2570843)
chr4 (199-359)||(54995649-54995809)
chr4 (79-272)||(2707998-2708196)
chr4 (211-344)||(33036064-33036196)
chr4 (257-344)||(51204636-51204723)
chr4 (211-329)||(17513008-17513126)
chr4 (257-396)||(20097395-20097537)
chr4 (211-331)||(22729777-22729896)
chr4 (211-342)||(22756794-22756924)
chr4 (279-359)||(2704550-2704628)
chr4 (240-348)||(28293124-28293232)
chr4 (42-181)||(5914957-5915096)
chr4 (84-186)||(49878892-49878993)
chr4 (257-324)||(51959922-51959989)
chr4 (211-285)||(5915657-5915731)
chr4 (47-181)||(14246414-14246548)
chr4 (211-329)||(37793452-37793570)
chr4 (211-325)||(47236934-47237048)
chr4 (211-331)||(5812633-5812753)
chr4 (125-177)||(54995016-54995068)
chr4 (94-161)||(1012529-1012596)
chr4 (125-181)||(28292430-28292486)
chr4 (38-106)||(9409522-9409589)
chr4 (214-265)||(33255572-33255621)
[»] chr6 (17 HSPs)
chr6 (42-355)||(11083845-11084158)
chr6 (40-399)||(19631748-19632112)
chr6 (42-358)||(26301609-26301932)
chr6 (59-321)||(34993907-34994175)
chr6 (38-181)||(4104238-4104381)
chr6 (42-181)||(4487743-4487882)
chr6 (42-181)||(25441709-25441848)
chr6 (36-158)||(30341461-30341583)
chr6 (47-181)||(18306573-18306707)
chr6 (200-297)||(30341124-30341221)
chr6 (38-181)||(6613676-6613819)
chr6 (211-285)||(25441074-25441148)
chr6 (288-359)||(4102865-4102936)
chr6 (238-277)||(4103031-4103070)
chr6 (211-328)||(4488444-4488561)
chr6 (368-398)||(7235188-7235218)
chr6 (309-358)||(30338515-30338564)
[»] scaffold0312 (2 HSPs)
scaffold0312 (211-349)||(8993-9131)
scaffold0312 (47-181)||(8233-8367)
[»] scaffold0262 (2 HSPs)
scaffold0262 (214-296)||(12031-12113)
scaffold0262 (125-177)||(11443-11495)
[»] scaffold0001 (1 HSPs)
scaffold0001 (125-181)||(65992-66048)


Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 593
Target Start/End: Complemental strand, 19073736 - 19073162
Alignment:
Q  19 cgagacctctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttac 118  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| | |    
T  19073736 cgagacctctacgttgcaatcagaaaattgacttttttgtaaaagttattttatttagtcaatagtataattgttgatgtcatgtcagtcagtgtcctgc 19073637  T
Q  119 tggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaaggaatttcagtgcaaaaaatgagaatctatgtttaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  19073636 tggtgaaccactttaaaactaaattttaccttattacaaatcagtcctcgtataaaatattaaaggaatttcagtgcaaaaaatgagaatctatgtttaa 19073537  T
Q  219 ctttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggat 318  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19073536 ctttgatttaatcagggacacaatttcaataagtaaatatataatgacacaccttatagacaaatgtggaatacaccatataatctgacgtgacatggat 19073437  T
Q  319 taaatacacaaattctcaatgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcctgctcttgtatctacacaca 418  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19073436 taaatacacaaattctcaatgattgaccatttaacttcaccaaaaaaaatcattctcataacttcaccatagaattttcctgctcttgtatctacacaca 19073337  T
Q  419 taggtttccttggagaatattaaatatttagtttcaatgattaattacactactaagttaaattgaactaattagttgttttcatttgatatataaatgt 518  Q
    |||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19073336 taggtttccttggatagtactaaatttttagtttcaatgattaattacactactaagttaaattgaactaattagttgttttcatttgatatataaatgt 19073237  T
Q  519 ttttgctattattatattataattcttggtaaaactcatagatgagaaaaaactacaagagaaataaattgatgt 593  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19073236 tgttgctattattatattataattcttggtaaaactcatagatgagaaaaaactacaagagaaataaattgatgt 19073162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 49 - 359
Target Start/End: Complemental strand, 41644227 - 41643910
Alignment:
Q  49 acttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttacc 148  Q
    ||||||||| ||||  |||||| ||||  ||||| ||||||||| |||||||||||||| |||||| | |||||| |||||| |||||||||| | ||||    
T  41644227 acttttttgaaaaatatattttgtttagccaataatataattgttgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaactctacc 41644128  T
Q  149 ttattacaaatcagttctcatacaaaa-tattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacaca 240  Q
    ||||||||||||||| ||||||||||| |||||| || |||||||      ||||| ||| |||||| |||||||||| ||||||||||||||||| |||    
T  41644127 ttattacaaatcagtcctcatacaaaaatattaaggggaatttcaatcttagtgcacaaa-tgagaaactatgtttaattttgatttaatcagggataca 41644029  T
Q  241 attgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatga 340  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  41644028 attgcaataagtaaagatataatgacacaccttatgatcaaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatga 41643929  T
Q  341 ttgaccatttaacttcacc 359  Q
    |||||||||||||||||||    
T  41643928 ttgaccatttaacttcacc 41643910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 42 - 359
Target Start/End: Complemental strand, 6178135 - 6177813
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||||||||||| ||||  ||||||||||| || ||||||||||||||| |||||| |  ||||| |||||| || |||||||    
T  6178135 aaaactgacttttttagaaaagttattttgtttagccaatagtataactgccgatgtcatgtcagctagtgtcatgttggtggaccactctagaactaaa 6178036  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaaaggaa-tttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagg 234  Q
     |||||||||||||||||||||  || ||||||||||||| |||| |||||      ||||| ||| ||||||||||||||||  |||||||||||||||    
T  6178035 ctttaccttattacaaatcagtcatcgtacaaaatattaagggaaatttcaatcttagtgcacaaa-tgagaatctatgtttat-tttgatttaatcagg 6177938  T
Q  235 gacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattct 334  Q
    |||||||||| |||||||||||||||||||||| |||||||   |||||| | |||||||||||||||||||||||||||| ||||||||||||||| ||    
T  6177937 gacacaattggaataagtaaatatataatgacataccttatgggcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgct 6177838  T
Q  335 caatgattgaccatttaacttcacc 359  Q
    |||||||||||||||||||||||||    
T  6177837 caatgattgaccatttaacttcacc 6177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 26 - 357
Target Start/End: Original strand, 18779078 - 18779409
Alignment:
Q  26 tctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaa 125  Q
    |||||| |||| | |||||| | | ||||||| |||||||||||| |||| |||||||||||| |  ||||||||||| ||| |||||| ||||||   |    
T  18779078 tctacgatgtagttagaaaactcatttttttggaaaagttattttgtttagtcaatagtataactaccgatgtcatgtaagctagtgtcctactggatga 18779177  T
Q  126 ccactttaaaactaaattttaccttattacaaatcagttctcatacaaa--atattaaaggaatttcagtgcaaaaaatgagaatctatgtttaactttg 223  Q
     |||| |||||||||| |||||||||||||||||||||  ||||| |||  | |||  |   || | |||||| ||| ||||||||||||||||||||||    
T  18779178 tcactctaaaactaaactttaccttattacaaatcagtcgtcatataaaggaaatttca---atcttagtgcacaaa-tgagaatctatgtttaactttg 18779273  T
Q  224 atttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaa--caaatgtggaatacaccatataatctgacgtgacatggattaa 321  Q
    ||||||||||| |||||||||||||||||||| ||| ||| |||||| |||| |   |||||||| |||| |||||||||||||| |||||||| |||||    
T  18779274 atttaatcaggaacacaattgcaataagtaaagataaaataacacactttattatggcaaatgtgcaataaaccatataatctgatgtgacatgaattaa 18779373  T
Q  322 atacacaaattctcaatgattgaccatttaacttca 357  Q
    |||||||||| |||||||||||||||||||||||||    
T  18779374 atacacaaatgctcaatgattgaccatttaacttca 18779409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 83 - 357
Target Start/End: Complemental strand, 15651168 - 15650888
Alignment:
Q  83 gtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaa 182  Q
    |||||| || ||||||||||||| | | |||| ||| |||| |||||| ||||| |||| ||||| ||||||||||||||| ||||||||||||||| |     
T  15651168 gtataactgccgatgtcatgtcatctaatgtcctaccggtggaccactctaaaattaaactttactttattacaaatcagtcctcatacaaaatatttag 15651069  T
Q  183 g-gaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttat 275  Q
    | ||||||||      ||||| ||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  15651068 gagaatttcaattttagtgcacaaa-tgagattctatgtttaattttgatttaatcaggaacacaattgcaataagtaaagatataatgacacaccttat 15650970  T
Q  276 aaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttca 357  Q
       |||||||| ||||||||||||||||| |||||| |||||||||||||||||||  | |||||||||| |||||||||||    
T  15650969 gggcaaatgtgaaatacaccatataatcttacgtgatatggattaaatacacaaatatttaatgattgacgatttaacttca 15650888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 59 - 359
Target Start/End: Original strand, 18059066 - 18059372
Alignment:
Q  59 aaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaa 158  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| ||| |||||  | ||  |  |||||| |||||||||| |||||||| |||||||    
T  18059066 aaaagttattttgtttagtcaatagtataattgtcgatgtcatgttagctagtgtgctgctaatagaccactctaaaactaaactttaccttgttacaaa 18059165  T
Q  159 tcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataag 251  Q
    |||||  |||||||||||||||| || |||||||      ||||| |||  |||||||||| ||||| ||| || |||||| ||||||||||||||||||    
T  18059166 tcagtcatcatacaaaatattaaggggaatttcaatcttagtgcacaaac-gagaatctatatttaattttaatctaatcaaggacacaattgcaataag 18059264  T
Q  252 taaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccattta 351  Q
    |||| ||||||| |||||| ||||  | |||| || |||||||||||||||||||| ||||||| |||||||||||||||  ||||| ||||||||||||    
T  18059265 taaagatataataacacacattatggataaatatgcaatacaccatataatctgacatgacatgaattaaatacacaaatattcaataattgaccattta 18059364  T
Q  352 acttcacc 359  Q
    || |||||    
T  18059365 acatcacc 18059372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 51 - 359
Target Start/End: Complemental strand, 41713513 - 41713202
Alignment:
Q  51 ttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttacctt 150  Q
    ||||||| |||||||||||| |||| |||||||||||||| || || |||||||||| |||||| |  ||||| |||||| ||||||||| ||||| |||    
T  41713513 ttttttgaaaaagttattttgtttagtcaatagtataattatcaatatcatgtcagctagtgtcatgttggtggaccactctaaaactaagttttatctt 41713414  T
Q  151 attacaaatcagttctcatacaaaatattaaaggaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattg 244  Q
    ||||||||||||| |||| ||||||||| |  |||||||||      ||||| ||  ||||||||||||||||| ||||||||||| ||||| |||||||    
T  41713413 attacaaatcagtcctcacacaaaatataaggggaatttcatttttagtgcacaag-tgagaatctatgtttaattttgatttaattagggaaacaattg 41713315  T
Q  245 caataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattga 344  Q
     |||||||| | ||||||||||||| |||||   |||||||| || |||||||||||  |||||||||||| |||||||||| ||||  ||||||||||     
T  41713314 taataagtatacatataatgacacatcttatgggcaaatgtgtaacacaccatataa--tgacgtgacatgaattaaatacataaatattcaatgattgg 41713217  T
Q  345 ccatttaacttcacc 359  Q
     ||||||| ||||||    
T  41713216 tcatttaatttcacc 41713202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 38 - 359
Target Start/End: Original strand, 18947293 - 18947608
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||| |||||||||   |||| ||||||| |||| || |||||||||  | | || |||||  ||| |||||| | |||||| |||||| ||||||    
T  18947293 tcagaaaactgactttttcagaaaaattattttgtttagtcgatagtataacggccaatatcatgctagctagtgtcctgctggtgtaccactctaaaac 18947392  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttcagtgcaaa-----aaatgagaatctatgtttaactttgatttaatc 231  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| || ||||||| |   ||     |||||||||||||||||||  ||||||||||||    
T  18947393 taaactttaccttattacaaatcagtcctcatacaaaatattaaggggaatttcaatcttaatgcacaaatgagaatctatgtttacttttgatttaatc 18947492  T
Q  232 agggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaat 331  Q
    ||||||||||||||            |||||||||||| |||||  |  |||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  18947493 agggacacaattgc------------tataatgacacatcttatggatgaatgtacaatacaccatataatctgacgtgacatggattaaatacacaaat 18947580  T
Q  332 tctcaatgattgaccatttaacttcacc 359  Q
      ||||||||||||||||||||||||||    
T  18947581 gttcaatgattgaccatttaacttcacc 18947608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 132 - 357
Target Start/End: Original strand, 27138798 - 27139028
Alignment:
Q  132 taaaactaaattttaccttattacaaatcagttctcatacaaaatattaaag-gaatttca------gtgcaaaaaatgagaatctatgtttaactttga 224  Q
    ||||| |||||||||||||||||||||| ||| ||||| ||||||||||| | ||||||||      ||||| ||| || |||||||||||||| |||||    
T  27138798 taaaattaaattttaccttattacaaataagtcctcatgcaaaatattaaggtgaatttcaatcttagtgcacaaa-tgggaatctatgtttaattttga 27138896  T
Q  225 tttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaata 324  Q
    |||||||||||||||||||||||   ||||| |||||||||||||| ||||   ||||| || |||||||| ||||||||||||||||||||||| ||||    
T  27138897 tttaatcagggacacaattgcaacccgtaaagatataatgacacactttatgggcaaatatgcaatacaccgtataatctgacgtgacatggatt-aata 27138995  T
Q  325 cacaaattctcaatgattgaccatttaacttca 357  Q
    |||||||  |||||||||| |||||||||||||    
T  27138996 cacaaatgatcaatgattggccatttaacttca 27139028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 199 - 399
Target Start/End: Original strand, 34441773 - 34441970
Alignment:
Q  199 aaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccata 298  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||| |||||   |||||||| |||||||||||    
T  34441773 aaatgagaatctatgtttaattttgatttaatcagggacacaattgcaataagtaaagatataacgacacatcttatgggcaaatgtgcaatacaccata 34441872  T
Q  299 taatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcc 398  Q
    |||  |||||||||||| |||||||||||||||  ||||| ||||  |||||||||| |||        ||||| |||| ||||||||||||||||||||    
T  34441873 taa--tgacgtgacatgaattaaatacacaaatattcaataattggtcatttaactttacc-aaaaaagtcattttcatgacttcaccatagaattttcc 34441969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 125 - 397
Target Start/End: Complemental strand, 42005664 - 42005390
Alignment:
Q  125 accactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaaggaatttca------gtgcaaaaaatgagaatctatgtttaa 218  Q
    |||||||||||| ||| |||||  |||||||||||||| ||||||||||||||| |    |||||||      ||||| ||| |||||||||||||||||    
T  42005664 accactttaaaattaagttttattttattacaaatcagctctcatacaaaatataaggaaaatttcaatcttagtgcacaaa-tgagaatctatgtttaa 42005566  T
Q  219 ctttgatttaatcaggg-acacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatgga 317  Q
     |||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||   ||| |||| |||||||||||||||  |||||||||||||    
T  42005565 ttttgatttaatcaggggacacaattacaataagtaaagatgtaatgacacaccttatgggcaa-tgtgcaatacaccatataat--gacgtgacatgga 42005469  T
Q  318 ttaaatacacaaattctcaatgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttc 397  Q
    ||||||| ||||||  |||||| |||| ||||||||||||||        ||||| |||| |||||||||||||||||||    
T  42005468 ttaaataaacaaatattcaatggttgatcatttaacttcacc-aaaaaaatcattttcatgacttcaccatagaattttc 42005390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 39788297 - 39788530
Alignment:
Q  41 gaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaa 140  Q
    ||||| ||| ||||||| |||||| ||||| |||| |||||||||||| ||||||||||||||||    ||||| | |||||| |||||| ||||| |||    
T  39788297 gaaaactgatttttttgaaaaagt-attttgtttagtcaatagtataactgtcgatgtcatgtcaattggtgtcctgctggtggaccactctaaaaataa 39788395  T
Q  141 attttaccttattacaaatcagttctcatacaaaatattaaagg-------aatttcagtgcaaaaaatgagaatctatgtttaactttgatttaatcag 233  Q
    | ||||||||||||||||||||||||||||| ||||||||| ||       ||||| ||||| | |||| ||||||||||||||| |||||||||| |||    
T  39788396 actttaccttattacaaatcagttctcatacgaaatattaaggggaatttcaattttagtgc-acaaatcagaatctatgtttaattttgatttaaccag 39788494  T
Q  234 ggacacaattgcaataagtaaatatataatgacaca 269  Q
     |||| ||||||| |||||||  |||||||||||||    
T  39788495 agacataattgcagtaagtaacaatataatgacaca 39788530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 19093815 - 19093676
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||||||||||||||  |||||||| ||| ||||||||||||||||||||| ||||| || ||| | ||||||||  ||| | |||||| ||||||||||    
T  19093815 aaaattgacttttttaaaaaagttaatttgtttaatcaatagtataattgttgatgttatctcaactagtgtcttgttggaggaccactctaaaactaaa 19093716  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaa 181  Q
     ||||||||||||||||||||| ||| |||||||||||||    
T  19093715 ctttaccttattacaaatcagtcctcttacaaaatattaa 19093676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 211 - 392
Target Start/End: Complemental strand, 30845033 - 30844850
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||| || ||| ||| ||||||||||||| || |||||||||| |||||  ||||||||| |||| | ||||||||||||||||    
T  30845033 atgtttaattttgatttaattagagactcaaatgcaataagtaaagatttaatgacacatcttatggacaaatgtgcaatatatcatataatctgacgtg 30844934  T
Q  311 acatggattaaatacacaaattctcaatgattgaccat----ttaacttcaccnnnnnnnntcattctcataacttcaccatagaa 392  Q
    ||||||||||||||||  ||| |||||||||||| |||    |||||||||||        |||||||||||||||||||||||||    
T  30844933 acatggattaaataca-gaatgctcaatgattgatcatgggattaacttcacc-ttaaaagtcattctcataacttcaccatagaa 30844850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 34441573 - 34441716
Alignment:
Q  48 gacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttac 147  Q
    |||||||||| ||||||||||||||||  ||||||||||||||| || | |||||||||| |||||| |  ||||| | ||||||||||||||  ||||     
T  34441573 gacttttttgaaaaagttattttatttggtcaatagtataattgccgttatcatgtcagctagtgtcatgttggtggatcactttaaaactaagctttat 34441672  T
Q  148 cttattacaaatcagttctcatacaaaatattaaaggaatttca 191  Q
    |||||||||||||||| |||||||||||||| |  |||||||||    
T  34441673 cttattacaaatcagtcctcatacaaaatataaggggaatttca 34441716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 58198 - 58097
Alignment:
Q  224 atttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaat 323  Q
    ||||||||||| |||||||||||||||||||| ||||  || |||||| ||| |||||||||| ||||||||||||||| |||  ||||||| |||||||    
T  58198 atttaatcagg-acacaattgcaataagtaaaaatattgtggcacaccgtatgaacaaatgtgcaatacaccatataatttgatctgacatgaattaaat 58100  T
Q  324 aca 326  Q
    |||    
T  58099 aca 58097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 118 - 305
Target Start/End: Original strand, 38249901 - 38250094
Alignment:
Q  118 ctggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttcagt------gcaaaaaatgagaatct 210  Q
    |||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||  |||||| || ||||||| |      ||  ||| || ||||||    
T  38249901 ctggtggaccactctaaaactaaattttaccttgttacaaatcagtcctcatacaa--tattaaggggaatttcaatcttagagcgcaaattg-gaatct 38249997  T
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgac----acaccttataaacaaatgtggaatacaccatataatctg 305  Q
      | |||| |||||||||||||||||||||||||||||||||||| ||||||||||    | |||||||   |||||||| |||||| |||||||||||    
T  38249998 --gattaattttgatttaatcagggacacaattgcaataagtaaagatataatgacatatataccttattggcaaatgtgcaatacatcatataatctg 38250094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 7565652 - 7565511
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||||| ||||| ||||| |||||| ||| ||||  ||| ||||||||| ||||||||  || || |||||| ||| ||||||    
T  7565652 aaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaa 7565553  T
Q  142 tttta--ccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||    ||||||||||||||| |||||||||||||||||    
T  7565552 ttttattttttattacaaatcagtcctcatacaaaatattaa 7565511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 211 - 399
Target Start/End: Original strand, 43446320 - 43446511
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||| |||| || | ||||||||||| |||||||||| ||||| ||||| ||| ||| | |||| ||| || |||||||||||| |||||||    
T  43446320 atgtttaattttaattttattaaggacacaattgtaataagtaaagatatagtgacataccctatgagcaaacgtgcaacacaccatataatttgacgtg 43446419  T
Q  311 acatggattaaatacacaaattctcaatgattgaccatt----taacttcaccnnnnnnnntcattctcataacttcaccatagaattttcct 399  Q
      ||| |||| |||| |||||  ||||||||||| ||||    ||||||||||        |||||||||| |||||||||||||||||||||    
T  43446420 gtatgcattagatacgcaaatgttcaatgattgatcattctcataacttcacc-gaaaaagtcattctcatgacttcaccatagaattttcct 43446511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 18514415 - 18514563
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||| ||| ||| ||||||| |||||||||||| ||||   |||||||||| |||  ||||||||||| | |||||| | |||||| |||||| ||| ||    
T  18514415 tcaggaaactgaattttttgaaaaagttattttgtttagctaatagtataactgttaatgtcatgtcaactagtgtcgtgctggtggaccactataagac 18514514  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaaggaa 186  Q
    | || ||||| |||||| |||||| |  |||||||||||||||| ||||    
T  18514515 tgaactttactttattataaatcaatcatcatacaaaatattaatggaa 18514563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 32652753 - 32652621
Alignment:
Q  49 acttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttacc 148  Q
    ||||||||  |||||| ||||| ||||| |||||| ||| ||||  ||| ||||||||| ||||||||  || |  |||||| | | | ||||||||||     
T  32652753 acttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatagaccactatgacattaaattttact 32652654  T
Q  149 ttattacaaatcagttctcatacaaaatattaa 181  Q
    ||||||||||||||| |||||||||||||||||    
T  32652653 ttattacaaatcagtcctcatacaaaatattaa 32652621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 22963544 - 22963458
Alignment:
Q  257 atataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattg 343  Q
    ||||||||||||||||||  ||||||| || | ||||||||||||||||||||  ||| |||||||||||||||  || ||||||||    
T  22963544 atataatgacacaccttaagaacaaatatgtagtacaccatataatctgacgttgcattgattaaatacacaaaagctaaatgattg 22963458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 7553540 - 7553420
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| |||||||||||||  ||||||||||||||||||||| ||||| ||| ||||| ||| || ||| ||  ||| ||| ||||||| | | |||    
T  7553540 atgtttaattttgatttaatcaatgacacaattgcaataagtaaaaatatagtgatacaccatatgaataaaagtacaatgcacaatataatttaatgtg 7553441  T
Q  311 acatggattaaatacacaaat 331  Q
     |||  |||||||||||||||    
T  7553440 gcattcattaaatacacaaat 7553420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 17244840 - 17244896
Alignment:
Q  125 accactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  17244840 accactctaaaactaaactttaccttattacaaatcactcctcatacaaaatattaa 17244896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 59529 - 59395
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| |||||||||||||||||  |||| | |||||| | |||| ||||||||| | || |||  || || ||||   ||| |||||||||||    
T  59529 tgacttttttgaaaaagttattttatttagccaattgcataattattgatgccatgtcagctaatggcttcttgatggaccaacgtaagactaaatttta 59430  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
     ||||||| ||||||||  || |||||||||||||    
T  59429 tcttattataaatcagtcatcgtacaaaatattaa 59395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 22997933 - 22998019
Alignment:
Q  257 atataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattg 343  Q
    |||||| |||||||||||  ||||||| || | ||||||||||||||||||||  ||| |||||||||||||||  || ||||||||    
T  22997933 atataacgacacaccttaagaacaaatatgtagtacaccatataatctgacgttgcattgattaaatacacaaaagctaaatgattg 22998019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 211 - 328
Target Start/End: Complemental strand, 32652023 - 32651906
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||| ||||| ||  ||||| ||| | |||||||  ||| | |  || ||| ||| |||    
T  32652023 atgtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcactaaaatttgatgtg 32651924  T
Q  311 acatggattaaatacaca 328  Q
    ||||| ||||||||||||    
T  32651923 acatgcattaaatacaca 32651906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 40912471 - 40912516
Alignment:
Q  136 actaaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||    
T  40912471 actaaattttactttattacaaatcagtcctcatacaaaatattaa 40912516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 45414326 - 45414395
Alignment:
Q  279 caaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccat 348  Q
    ||||| || ||| ||||||||| ||||||||||||| ||||||||| |||||| |||||| |||||||||    
T  45414326 caaatatgcaatgcaccatatattctgacgtgacatagattaaatatacaaatgctcaataattgaccat 45414395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 39788538 - 39788586
Alignment:
Q  310 gacatggattaaatacacaaattctcaatgattgaccatttaacttcac 358  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||||||    
T  39788538 gacatggattaaatacacaaatgctcaatgattgactatttgacttcac 39788586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 38255549 - 38255595
Alignment:
Q  297 tataatctgacgtgacatggattaaatacacaaattctcaatgattg 343  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  38255549 tataatctgaagtgtcatggattaaatacacaaattcttaatgattg 38255595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 40913164 - 40913211
Alignment:
Q  214 tttaactttgatttaatcagggacacaattgcaataagtaaatatata 261  Q
    ||||| ||||||||||||| ||||||||||||||||| |||| |||||    
T  40913164 tttaattttgatttaatcaaggacacaattgcaataaataaaaatata 40913211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 6357177 - 6357043
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| |||||| |||| |||||  |||||| |||||| |  ||| |||||||||   ||||||  || || |||||| ||| |||||||||||    
T  6357177 tgacttttttgaaaaagtcatttaatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggaccactataagactaaatttta 6357078  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
    | |||||| |||| ||| ||   ||||||||||||    
T  6357077 ctttattataaataagtccttgaacaaaatattaa 6357043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 398
Target Start/End: Complemental strand, 31861925 - 31861895
Alignment:
Q  368 tcattctcataacttcaccatagaattttcc 398  Q
    |||||||||||||||||||||||||||||||    
T  31861925 tcattctcataacttcaccatagaattttcc 31861895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 6348897 - 6348832
Alignment:
Q  220 tttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgt 285  Q
    ||||||||||| | |||| |||||||||||||||||  |||||||  ||||| ||| |||||||||    
T  6348897 tttgatttaattaaggacccaattgcaataagtaaaactataatggtacaccatatgaacaaatgt 6348832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 399
Target Start/End: Original strand, 31570909 - 31570938
Alignment:
Q  370 attctcataacttcaccatagaattttcct 399  Q
    ||||||||||||||||||||||||||||||    
T  31570909 attctcataacttcaccatagaattttcct 31570938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 43445342 - 43445387
Alignment:
Q  136 actaaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||||||||| ||||||||||| ||| || ||||||||||||||    
T  43445342 actaaattttactttattacaaattagtccttatacaaaatattaa 43445387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 38 - 399
Target Start/End: Complemental strand, 22616855 - 22616493
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||| ||| ||||||| |||||||||||| ||||  ||||||||||| ||  |   |||||||||| |||||| | |||||| |||||| ||||||    
T  22616855 tcagaaaactgatttttttggaaaagttattttgtttagccaatagtataactgcag---tcatgtcagctagtgtcctgctggtggaccactctaaaac 22616759  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaagg-------aatttcagtgcaaaaaatgagaatctatgtttaactttgatttaat 230  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| ||       ||||| |||||| ||| ||||||||||||||||| |||||||||||    
T  22616758 taaactttaccttattacaaatcagtcctcatacaaaatattaaggggaatttcaattttagtgcacaaa-tgagaatctatgtttaattttgatttaat 22616660  T
Q  231 cagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaa 330  Q
    ||||||||||||||||||||||||| |||||||||||||||||||   |||||||  ||||||||||||||| |||||||||||||||||||||||  ||    
T  22616659 cagggacacaattgcaataagtaaagatataatgacacaccttatgggcaaatgtccaatacaccatataatatgacgtgacatggattaaataca-taa 22616561  T
Q  331 ttctcaatgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcct 399  Q
    | ||||||||||| |||||||||||||||        ||||| |||| |||||||||||||||||||||    
T  22616560 tgctcaatgattggccatttaacttcacc-agaaaagtcattttcatgacttcaccatagaattttcct 22616493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 49 - 358
Target Start/End: Original strand, 36055569 - 36055883
Alignment:
Q  49 acttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttacc 148  Q
    ||||||||| |||||||||||| ||||   |||||||||| || |||||||| |||| | |||||| | ||||||  ||||| |||||||||| ||||||    
T  36055569 acttttttggaaaagttattttgtttagctaatagtataactggcgatgtcaagtcaactagtgtcgtgctggtggcccactctaaaactaaactttacc 36055668  T
Q  149 ttattacaaatcagttctcatacaaaatattaaaggaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaat 242  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||      ||||| ||| ||||||||||||||||| |||||||||||| ||||||||||    
T  36055669 ttattacaaatcaattctcatacaagatattaagggaatttcaatcttagtgcacaaa-tgagaatctatgtttaattttgatttaatcggggacacaat 36055767  T
Q  243 tgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgatt 342  Q
    || |||||||||| ||||||||||||||||||| | |||||||| |||||||||| |||||||| | |||||| ||||||| ||||||| ||||||||||    
T  36055768 tgtaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacaccatgtaatctgatgcgacatgaattaaattcacaaatgctcaatgatt 36055867  T
Q  343 gaccatttaacttcac 358  Q
    ||||||||||||||||    
T  36055868 gaccatttaacttcac 36055883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 40 - 359
Target Start/End: Complemental strand, 31878747 - 31878421
Alignment:
Q  40 agaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaacta 139  Q
    ||||||||||||||||   |||||||| ||| ||||| ||||||||||| |||||||||| || |||| |||||| |  ||||| |||||| ||||| ||    
T  31878747 agaaaattgactttttaaaaaaagttagtttgtttaaccaatagtataactgtcgatgtcgtgccagctagtgtcctgttggtggaccactctaaaatta 31878648  T
Q  140 aattttaccttattacaaatcagttctcatacaaaa-tattaa-aggaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatc 231  Q
    || |||||||||||||| |||||||| ||||||||| |||||| | ||||||||      ||||| |||  | |||||||||||||| ||||||||||||    
T  31878647 aactttaccttattacagatcagttcccatacaaaaatattaagaagaatttcaatcttagtgcacaaatag-gaatctatgtttaattttgatttaatc 31878549  T
Q  232 agggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaat 331  Q
    |||||||||||||  ||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  31878548 agggacacaattgtcataagtaaagatataatgacacaccttatagacaaatgtgcaatacaccatataatctgacgtgacatgaattaaatacacaaat 31878449  T
Q  332 tctcaatgattgaccatttaacttcacc 359  Q
     || |||||||||| |||||||||||||    
T  31878448 gcttaatgattgacaatttaacttcacc 31878421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 65 - 358
Target Start/End: Original strand, 41417289 - 41417588
Alignment:
Q  65 tattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatcagtt 164  Q
    |||||| |||||  |||||||||| ||||||||||||||||||  ||||| | |||||| | || ||||||||||||||||||||||||||||||||||     
T  41417289 tattttgtttaactaatagtataactgtcgatgtcatgtcagctggtgtcatgctggtggatcattttaaaactaaattttaccttattacaaatcagtc 41417388  T
Q  165 ctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaata 257  Q
     |||||||||||| ||| || |||||||      ||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |    
T  41417389 atcatacaaaataataaggggaatttcaatcttagtgcacaaa-tgagaatctatgtttaattttgatttaatctgggacacaattgcaataagtaaaga 41417487  T
Q  258 tataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttca 357  Q
    || ||||||||||||||| | ||||| || |||||||||||||||||||| ||| ||  |||||||||||||||  ||||||||| ||||||||||||||    
T  41417488 taaaatgacacaccttatgagcaaatttgcaatacaccatataatctgacatgatataaattaaatacacaaatgttcaatgattaaccatttaacttca 41417587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 47 - 358
Target Start/End: Complemental strand, 10237768 - 10237453
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||  |||||||||||| ||||  |||||||||||  ||||||||||||||||| | |||| |  ||||  |||||| || ||||||| ||||    
T  10237768 tgacttttttagaaaagttattttgtttagccaatagtataac-gtcgatgtcatgtcagctaatgtcatgttggtagaccactctagaactaaacttta 10237670  T
Q  147 ccttattacaaatcagttctcatacaaaatattaaaggaa-tttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacac 239  Q
    ||||||||||||| |||  || ||||||||||||| |||| |||||      ||| | ||| ||||||||||||||||  |||||||||||| |||||||    
T  10237669 ccttattacaaattagtcatcgtacaaaatattaagggaaatttcaatcttagtgtacaaa-tgagaatctatgtttat-tttgatttaatctgggacac 10237572  T
Q  240 aattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatg 339  Q
    ||||| |||||||||||||||||||| | |||||||  ||||||| | |||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  10237571 aattggaataagtaaatatataatgaaataccttatggacaaatgcgcaatacaccatataatctgacgtgaaatgaattaaatacacaaatgctcaatg 10237472  T
Q  340 attgaccatttaacttcac 358  Q
    |||||||||||||||||||    
T  10237471 attgaccatttaacttcac 10237453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 331
Target Start/End: Complemental strand, 33163890 - 33163579
Alignment:
Q  26 tctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaa 125  Q
    |||||| || ||||||||||  |||||||||| |||| ||||||  |||| |||||||||||| || ||||||||||||||| |||||| | ||| || |    
T  33163890 tctacggtgcaatcagaaaaccgacttttttggaaaaattatttg-tttagtcaatagtataactgccgatgtcatgtcagctagtgtcatgctg-tgga 33163793  T
Q  126 ccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaaggaa-tttcagtgcaaa-----aaatgagaatctatgtttaac 219  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||||||||||| | || ||||| |   ||     | |||||||| |||||||||     
T  33163792 ccactttaaaactaaactttaccttattacaaatcagtcttcatacaaaatattaaggaaaatttcaatcttaatgcacacatgagaatttatgtttaat 33163693  T
Q  220 tttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacacca--tataatctgacgtgacatgga 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  | ||||||| |||||||||  |||||||||| ||| ||| ||    
T  33163692 tttgatttaatcagggacacaattgcaataagtaaagatataatggcacaccttatggataaatgtgcaatacaccatatataatctgatgtggcataga 33163593  T
Q  318 ttaaatacacaaat 331  Q
    ||||| ||||||||    
T  33163592 ttaaacacacaaat 33163579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 39 - 357
Target Start/End: Complemental strand, 21321114 - 21320791
Alignment:
Q  39 cagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaact 138  Q
    ||||||| ||||||||||| |||||||||||| ||||  ||||||||||| || |||| ||||| |||| |||||  | |||||| | || | |||||||    
T  21321114 cagaaaactgacttttttgaaaaagttattttgtttagccaatagtataactgacgatttcatgccagctagtgttctgctggtggatca-tctaaaact 21321016  T
Q  139 aaattttaccttattacaaatcagttctcatacaaaatattaaaggaa-------tttcagtgcaaaaaatgagaatctatgtttaactttgatttaatc 231  Q
    ||| ||||||||  ||||||||| | |||||||||||||||||  |||       ||| |||||  ||| ||||||||||||||||| ||||||||||||    
T  21321015 aaactttaccttcctacaaatcaatcctcatacaaaatattaagcgaaatttcaattttagtgctcaaa-tgagaatctatgtttaattttgatttaatc 21320917  T
Q  232 agggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaat 331  Q
    || |||||||||| |||||||||| ||||||||| ||| ||||||  ||||| || ||||||||||||||||||| ||| |||   |||||||||| |||    
T  21320916 agagacacaattgtaataagtaaagatataatgatacatcttatatgcaaatatgcaatacaccatataatctgatgtggcattagttaaatacacgaat 21320817  T
Q  332 tctcaatgattgaccatttaacttca 357  Q
     |||||||||||| ||||||||||||    
T  21320816 gctcaatgattgatcatttaacttca 21320791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 38 - 315
Target Start/End: Complemental strand, 27579391 - 27579110
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||| | ||||||||| |||||||||| | ||||  ||||| ||||| |||||||||||||| ||| |||||  |||||||| |||||| ||||||    
T  27579391 tcagaaaactaacttttttggaaaagttattatctttagacaataatataactgtcgatgtcatgttagctagtgttctactggtggaccactctaaaac 27579292  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaag-gaatttc------agtgcaaaaaatgagaatctatgtttaactttgatttaat 230  Q
    |||| ||||||||||||||||||| | || | |||||||||||| | |||||||      |||||| |||  || |   ||||||||  |||||||||||    
T  27579291 taaactttaccttattacaaatcattccttaaacaaaatattaaggagaatttcaatcttagtgcacaaatggaaa---tatgtttacttttgatttaat 27579195  T
Q  231 cagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatg 315  Q
     || |||||||||||||||| |||| |||||||||| ||| |||||  ||||| || ||||||||||||||||||||||||||||    
T  27579194 tagagacacaattgcaataaataaagatataatgacgcactttataggcaaatatgcaatacaccatataatctgacgtgacatg 27579110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 211 - 344
Target Start/End: Complemental strand, 25653770 - 25653637
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||||||| | | |||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||| |||||||||||    
T  25653770 atgtttaattttgatttaatcagggaaatagttgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacaccatacaatctgacgtg 25653671  T
Q  311 acatggattaaatacacaaattctcaatgattga 344  Q
    | ||| ||||||||||||||| ||||||||||||    
T  25653670 atatgaattaaatacacaaatactcaatgattga 25653637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 12080412 - 12080558
Alignment:
Q  33 tgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccacttt 132  Q
    |||| |||| ||||||||||||||| |||||||||||| |||| || |||  |||||||| |||||||||||||| |||||| | |||||| ||||||||    
T  12080412 tgtagtcaggaaattgacttttttgaaaaagttattttgtttagtcgataacataattgttgatgtcatgtcagctagtgtcctgctggtggaccacttt 12080511  T
Q  133 aaaactaaattttaccttattacaaatcagttctcatacaaaatatt 179  Q
    || |||||| ||||||||||||||||||||| |||||||||||||||    
T  12080512 aagactaaactttaccttattacaaatcagtcctcatacaaaatatt 12080558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 214 - 329
Target Start/End: Complemental strand, 10053406 - 10053291
Alignment:
Q  214 tttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgaca 313  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||| |||||||| ||||| |||    
T  10053406 tttaattttgatttaatcagggactcaattgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacacgatataatccgacgtaaca 10053307  T
Q  314 tggattaaatacacaa 329  Q
    ||||||||||||||||    
T  10053306 tggattaaatacacaa 10053291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 12081129 - 12081248
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatc-tgacgt 309  Q
    |||||||| ||||||||||||||||||  |||||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||||||| ||| |     
T  12081129 atgtttaattttgatttaatcagggacttaattgcaataagtaaagatataaggacacaccttataagcaaatgtgtaatacaccatataatcttgatgc 12081228  T
Q  310 gacatggattaaatacacaa 329  Q
    | ||||||||| ||||||||    
T  12081229 gtcatggattatatacacaa 12081248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 33752910 - 33753030
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||| ||| ||| ||||||||| |  ||||||||| |||| ||| |||||||||| |||    
T  33752910 atgtttaaattttatttaatcagggacacaatggcaataagtaaagatacaataacacaccttgtggacaaatgtgcaataaaccctataatctgaagtg 33753009  T
Q  311 acatggattaaatacacaaat 331  Q
    |||| ||||||||||||||||    
T  33753010 acattgattaaatacacaaat 33753030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 213 - 343
Target Start/End: Complemental strand, 26411481 - 26411351
Alignment:
Q  213 gtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgac 312  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||||| || || ||  ||| | |||||||  ||||||||||||||| |||||||||    
T  26411481 gtttaattttgatttaattagggatacaattgcaataagtaaatatatagtggcatactgtatgagcaaatgtacaatacaccatataatttgacgtgac 26411382  T
Q  313 atggattaaatacacaaattctcaatgattg 343  Q
    ||| |||||||||| ||||  ||||||||||    
T  26411381 atgtattaaatacataaatattcaatgattg 26411351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 29766498 - 29766628
Alignment:
Q  51 ttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttacctt 150  Q
    ||||||| | |||||||||||||||  ||||||||||| |||  ||| ||||||| | |||||  ||||| || |||||| ||| |||||| ||||||||    
T  29766498 ttttttggataagttattttatttatccaatagtataactgttaatgccatgtcaactagtgttctactgatggaccactctaagactaaactttacctt 29766597  T
Q  151 attacaaatcagttctcatacaaaatattaa 181  Q
    ||||||||| |||||||||||||||||||||    
T  29766598 attacaaattagttctcatacaaaatattaa 29766628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 25654704 - 25654589
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||  |||||||||||| ||||| ||||||||||||||| ||||| |||||| | ||||| ||| || || |||||| |||||||||| ||||    
T  25654704 tgacttttttagaaaagttattttgtttaaccaatagtataattgttgatgt-atgtcaactagtgtattattgatggaccactctaaaactaaacttta 25654606  T
Q  147 ccttattacaaatcagt 163  Q
    |||||||||||||||||    
T  25654605 ccttattacaaatcagt 25654589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 33848030 - 33848173
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||||||||| ||||| |||||||| ||| ||||||||||| |||||||||  ||| ||||| ||| |||||| | ||| |  || ||| ||| ||    
T  33848030 tcagaaaattgactattttgaaaaagttactttgtttaatcaataatataattgttaatgacatgtaagctagtgtcatgctgatagactactctaagac 33848129  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||| |||||||||||| |||||| | |||||||||||||||||    
T  33848130 taaactttaccttattaaaaatcaatcctcatacaaaatattaa 33848173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 211 - 343
Target Start/End: Original strand, 33848549 - 33848681
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| |||||||||||||| ||||||||  |||||| |||| ||| ||| |||||| || |  ||||||||| |||| | | |||||||||| |||    
T  33848549 atgtttaattttgatttaatcagagacacaatgacaataaataaagatacaataacacacattgtggacaaatgtgcaataaatcctataatctgaagtg 33848648  T
Q  311 acatggattaaatacacaaattctcaatgattg 343  Q
    |||| |||||||||||||||| || ||||||||    
T  33848649 acattgattaaatacacaaatgctaaatgattg 33848681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 8762883 - 8763022
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||||| ||||| ||||| |||||| ||| ||||  ||| ||||||||| ||||||||  || || |||||  ||| ||||||    
T  8762883 aaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggaccaccgtaacactaaa 8762982  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| ||||||||||||||| ||| |||||||||||||    
T  8762983 ttttactttattacaaatcagtcctcgtacaaaatattaa 8763022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 13888468 - 13888329
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||||| ||||||||||| |||| | ||| ||||  ||| ||||||||| ||||||||  || || ||| || ||| ||||||    
T  13888468 aaaaatgacttttttaaaaaagtcattttatttaaccaattgcatagttgtttatgccatgtcagctagtgtctttgtgatggacccctgtaacactaaa 13888369  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| |||||| |||||||| |||||||||||||||||    
T  13888368 ttttactttattataaatcagtcctcatacaaaatattaa 13888329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 13381245 - 13381123
Alignment:
Q  59 aaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaa 158  Q
    |||| ||||||| |||| |||||||||||| ||| |||||||||||||| |||||  | |||||| ||| || |||  ||||| |||||||||||| |||    
T  13381245 aaaaattattttgtttagtcaatagtataactgttgatgtcatgtcagctagtgttctgctggtggacctctctaaggctaaactttaccttattataaa 13381146  T
Q  159 tcagttctcatacaaaatattaa 181  Q
    ||| | |||||||||||||||||    
T  13381145 tcaatcctcatacaaaatattaa 13381123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 13887427 - 13887307
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||  ||||| ||| | |||||||  ||| | |  || ||| ||| |||    
T  13887427 atgtttaattttgatttaatcaaggacacaattgcaataagtaaaaatataatggtacaccatatgagcaaatgtacaatgcgcagtaaaatttgatgtg 13887328  T
Q  311 acatggattaaatacacaaat 331  Q
    ||||| |||||||||||||||    
T  13887327 acatgcattaaatacacaaat 13887307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 21266205 - 21266130
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtg 286  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||| | ||||||||    
T  21266205 atgtttaaatttgatttaatcagagactcaattgcaataagtaaagatataatgatacaccttatgagcaaatgtg 21266130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 13380685 - 13380560
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||| |  ||||    ||||||| |||||||||| || | ||||||     
T  13380685 atgtttaattttgatttaatcagggatacaattgcaataaataaagatataatgacatattttatgggtaaatgtgcaatacaccatgtagtatgacgtt 13380586  T
Q  311 acatggattaaatacacaaattctca 336  Q
    | |  |||||||||||||||| ||||    
T  13380585 ataaagattaaatacacaaatactca 13380560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 10053952 - 10053820
Alignment:
Q  43 aaattgacttttttgcaaaagttat-tttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    ||||||||||||||| ||||||||| ||| ||||  ||||||||||| ||| |||||||||||||| |||         ||| |||||| ||  ||||||    
T  10053952 aaattgacttttttgaaaaagttatgtttgtttacccaatagtataactgttgatgtcatgtcagctagt---------gtggaccactctacgactaaa 10053862  T
Q  142 ttttaccttattac--aaatcagttctcatacaaaatattaa 181  Q
    |||||| |||||||  |||||||| |||||||||||||||||    
T  10053861 ttttactttattacaaaaatcagtcctcatacaaaatattaa 10053820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 26412186 - 26412052
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    |||||| |||| |||||| ||||||||||  |||||| || ||||| |||||||||||||| | | ||||  || || |||| | ||| |||||||| ||    
T  26412186 tgacttatttgaaaaagtcattttatttagccaatagcatgattgttgatgtcatgtcagctaatatctttgtgatggaccattgtaagactaaattata 26412087  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
     |||||| ||||||||| ||| || ||||||||||    
T  26412086 tcttattgcaaatcagtcctcgtataaaatattaa 26412052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 3014785 - 3014672
Alignment:
Q  59 aaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaa 158  Q
    |||||| ||||| ||||| |||||| ||| ||||  ||| ||||||||  ||||||||  || || |||||| ||| |||||||||||| ||||||||||    
T  3014785 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagttagtgtctttgtgatggaccactgtaacactaaattttactttattacaaa 3014686  T
Q  159 tcagttctcataca 172  Q
    ||| | ||||||||    
T  3014685 tcaatcctcataca 3014672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 8777275 - 8777395
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||  | |||||||||||||||||||||| ||||| ||  ||||| ||| | |||||||  ||| |||  || ||| ||| |||    
T  8777275 atgtttaattttgatttaacgaaggacacaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcacactaaaatttgatgtg 8777374  T
Q  311 acatggattaaatacacaaat 331  Q
     |||| |||||||||||||||    
T  8777375 gcatgcattaaatacacaaat 8777395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 33752412 - 33752534
Alignment:
Q  59 aaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaa 158  Q
    |||||||| ||| |||| |||||| |||||||||  ||| ||||| ||| | |||| |  ||||  || ||| ||| |||||| |||||||||||| |||    
T  33752412 aaaagttactttgtttagtcaataatataattgttaatgacatgtgagctactgtcatgttggtagactactctaagactaaactttaccttattaaaaa 33752511  T
Q  159 tcagttctcatacaaaatattaa 181  Q
    ||| | |||||||||||||||||    
T  33752512 tcaatcctcatacaaaatattaa 33752534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 12164016 - 12164136
Alignment:
Q  61 aagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatc 160  Q
    |||||| ||| |||| ||||||| |||||  | |||||||||||||| ||||| ||  ||||| |||| | |||| ||||| |||   ||||||||||||    
T  12164016 aagttaatttgtttagtcaataggataatcattgatgtcatgtcagctagtgtattgttggtggaccattgtaaatctaaacttttttttattacaaatc 12164115  T
Q  161 agttctcatacaaaatattaa 181  Q
    ||| |||||| |||| |||||    
T  12164116 agtcctcataaaaaacattaa 12164136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 25521705 - 25521745
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataag 251  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  25521705 atgtttaattttgatttaatcaaggacacaattgcaataag 25521745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 399
Target Start/End: Original strand, 22974227 - 22974258
Alignment:
Q  368 tcattctcataacttcaccatagaattttcct 399  Q
    ||||||||||||||||||||||||||||||||    
T  22974227 tcattctcataacttcaccatagaattttcct 22974258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 331
Target Start/End: Complemental strand, 25513952 - 25513841
Alignment:
Q  220 tttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggatt 319  Q
    ||||||||||||| ||| |||||||||||||||||| ||||| ||  ||||| ||| | |||||||  ||| | |  || ||| ||| ||||| || |||    
T  25513952 tttgatttaatcaaggagacaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcagtaaaatttgatgtgacttgtatt 25513853  T
Q  320 aaatacacaaat 331  Q
    ||||||||||||    
T  25513852 aaatacacaaat 25513841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 398
Target Start/End: Complemental strand, 15724520 - 15724490
Alignment:
Q  368 tcattctcataacttcaccatagaattttcc 398  Q
    |||||||||||||||||||||||||||||||    
T  15724520 tcattctcataacttcaccatagaattttcc 15724490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 6e-82; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 26 - 358
Target Start/End: Original strand, 32180422 - 32180756
Alignment:
Q  26 tctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaa 125  Q
    |||||| |||| ||||||||||||||| |||| |||||||||||| ||||  ||||||||||| ||  ||||||||||| || |||||| | |||||| |    
T  32180422 tctacgatgtagtcagaaaattgacttctttggaaaagttattttgtttagccaatagtataactgctgatgtcatgtcggctagtgtcctgctggtgga 32180521  T
Q  126 ccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaa 218  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||      ||||| |||  || |||||||||||||    
T  32180522 ccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaaggggaatttcaatcttagtgcacaaatgga-aatctatgtttaa 32180620  T
Q  219 ctttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggat 318  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||  || ||||||||| |||  ||| ||||||||||||||||||  ||    
T  32180621 ttttgatttaatcagggacacaattgcaataagtaaagatataatgacacacct--tagacaaatgtgcaat--accgtataatctgacgtgacataaat 32180716  T
Q  319 taaatacacaaattctcaatgattgaccatttaacttcac 358  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  32180717 taaatacacaaatgctcaatgattaaccatttaacttcac 32180756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 38 - 397
Target Start/End: Original strand, 19606596 - 19606961
Alignment:
Q  38 tcagaaaattgactttttt-gcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaa 136  Q
    ||||||||||| ||||||| | |||||||||||| |||| |||||||||| |  | ||||||||||||||| |||||| | || ||| |||||| |||||    
T  19606596 tcagaaaattggctttttttgaaaaagttattttgtttagtcaatagtattaccgccgatgtcatgtcagctagtgtcctgctcgtggaccactctaaaa 19606695  T
Q  137 ctaaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaa 229  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||      ||||| |||  || ||||||||||||| ||||||||||    
T  19606696 ctaaactttaccttattacaaatcagtcctcatacaaaatattaaggggaatttcaatcttggtgcacaaatgga-aatctatgtttaattttgatttaa 19606794  T
Q  230 tcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaa 329  Q
    | |||||||| ||||||| ||||||| |||||||||||||||||||  | ||||||  ||||||||||||||||||||||||| || |||||||||||||    
T  19606795 taagggacacgattgcaacaagtaaagatataatgacacaccttatggaaaaatgttcaatacaccatataatctgacgtgacctgaattaaatacacaa 19606894  T
Q  330 attctcaatgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttc 397  Q
    || |||||| ||||  ||||||||||||||        ||||| | ||||||||||||||||||||||    
T  19606895 atgctcaatcattggtcatttaacttcacc-agaaaagtcatttttataacttcaccatagaattttc 19606961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 40 - 359
Target Start/End: Original strand, 38392313 - 38392638
Alignment:
Q  40 agaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaacta 139  Q
    |||||||||||||||||  |||||||||||| ||||  ||||| ||||| ||  ||| |||| ||||| |||||| |  |||||||||  | ||||||||    
T  38392313 agaaaattgacttttttagaaaagttattttgtttagccaataatataactgctgatatcatatcagctagtgtcatgttggtgaaccgttctaaaacta 38392412  T
Q  140 aattttaccttattacaaatcagttctcatacaaaatattaaaggaa-tttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatca 232  Q
    |||||||| |||||||||||||||  || ||||||||||||| |||| |||||      ||||| ||| ||| ||||||||||||| |||||||||||||    
T  38392413 aattttacattattacaaatcagtcatcttacaaaatattaagggaaatttcaatcttagtgcataaa-tgaaaatctatgtttaattttgatttaatca 38392511  T
Q  233 gggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaatt 332  Q
    |||||||||||||||||||||||||||||||||||||| ||||   |||||||| |||||| ||||||||||| | |||||||||||||||||||||||     
T  38392512 gggacacaattgcaataagtaaatatataatgacacacattatgggcaaatgtgcaatacatcatataatctgtcatgacatggattaaatacacaaatg 38392611  T
Q  333 ctcaatgattgaccatttaacttcacc 359  Q
     ||||||| ||||||||||||||||||    
T  38392612 ttcaatgactgaccatttaacttcacc 38392638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 42 - 399
Target Start/End: Original strand, 40640317 - 40640683
Alignment:
Q  42 aaaattgactttttt-gcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaa 140  Q
    ||||||||||||||| | |||||||||||| |||| |||||||||||| || | ||||||||||| |  ||| | | |||||  | |||| |||||||||    
T  40640317 aaaattgactttttttgaaaaagttattttgtttagtcaatagtataagtgcctatgtcatgtcaactggtgccctgctggtagatcactctaaaactaa 40640416  T
Q  141 attttaccttattacaaatcagttctcatacaaaatattaaag-gaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcag 233  Q
    | ||||  ||||||||||||||| ||||||||||||||||| | ||||||||      ||||| ||| ||||||| ||| ||||| |||||||||||||     
T  40640417 actttattttattacaaatcagtcctcatacaaaatattaaggagaatttcaattttagtgcacaaa-tgagaatatatctttaattttgatttaatcaa 40640515  T
Q  234 ggacacaattgca---ataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaa 330  Q
    |||||||||||||   ||||||||| ||||||||||||| |||||   |||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  40640516 ggacacaattgcagcaataagtaaaaatataatgacacatcttatgggcaaatgtgcaatacaccatataatatgacgtgacatggattaaatacacaaa 40640615  T
Q  331 ttctcaatgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcct 399  Q
    | |||||||||||||||||||||||||||        |||||||||| |||||||||||||||||||||    
T  40640616 tgctcaatgattgaccatttaacttcacc-agaaaagtcattctcatgacttcaccatagaattttcct 40640683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 40 - 358
Target Start/End: Original strand, 49359313 - 49359637
Alignment:
Q  40 agaaaattgacttttttgcaaaa-gttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaact 138  Q
    |||||||||||||||||| |||| |||||||| ||||  || ||||||||    ||||||||||||||| |||||| || ||||  |||| | |||| ||    
T  49359313 agaaaattgacttttttgaaaaaagttattttgtttagccattagtataacaaccgatgtcatgtcagctagtgtcctagtggtagaccaatctaaa-ct 49359411  T
Q  139 aaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatc 231  Q
    ||| |||||||||||| |||||||| |||||||||||||||||||| |||||||      ||||| |||  || ||||||||||||| ||||||||||||    
T  49359412 aaactttaccttattataaatcagtcctcatacaaaatattaaagggaatttcaatcttagtgcacaaataga-aatctatgtttaattttgatttaatc 49359510  T
Q  232 agggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaat 331  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| | |||||||| |||||| |||||||| ||||||| ||||||||||||||||||||    
T  49359511 agggacacaattgcattaagtaaagatataatgacacaccttatgagcaaatgtgcaatacatcatataatatgacgtgtcatggattaaatacacaaat 49359610  T
Q  332 tctcaatgattgaccatttaacttcac 358  Q
      |||||||||| ||||||||||||||    
T  49359611 gttcaatgattggccatttaacttcac 49359637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 42 - 359
Target Start/End: Original strand, 7568413 - 7568729
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| |||| |||||| |||||||||||| |||| |||||||||||| ||||||| | |||||||| |||||  | |||||| |||||| ||||||||||    
T  7568413 aaaactgacatttttgaaaaagttattttgtttagtcaatagtataactgtcgattttatgtcagctagtgttctgctggtggaccactctaaaactaaa 7568512  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagg 234  Q
     |||       ||||||||||| ||||||||||||||||| || |||||||      ||||| ||| ||||||||||||||||| ||||||||||||||     
T  7568513 cttt-------tacaaatcagtcctcatacaaaatattaaggggaatttcaatcttagtgcacaaa-tgagaatctatgtttaattttgatttaatcaga 7568604  T
Q  235 gacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattct 334  Q
    |||||||||| |||||||||| |||||||||||||| ||||   |||||||| |||||  ||||||||||||||||||||| ||||||||||||||| ||    
T  7568605 gacacaattgtaataagtaaagatataatgacacactttatgtgcaaatgtgcaatactgcatataatctgacgtgacatgaattaaatacacaaatgct 7568704  T
Q  335 caatgattgaccatttaacttcacc 359  Q
    |||||||| ||||||||||||||||    
T  7568705 caatgatttaccatttaacttcacc 7568729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 59 - 399
Target Start/End: Original strand, 45879191 - 45879547
Alignment:
Q  59 aaaagttattttatttaatcaatagta---taattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattac 155  Q
    |||||||||||| ||||  ||||||||   ||||||  |||||||||||||| ||||||   |||||| ||||||||||| ||||| |||||||||||||    
T  45879191 aaaagttattttgtttagccaatagtaatataattgctgatgtcatgtcagctagtgtc---ctggtggaccactttaaagctaaactttaccttattac 45879287  T
Q  156 aaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaat 248  Q
    |||||||| |||||||||||||| || || |||||||      ||||| ||| ||||||||||||||||| ||||||||||||||| | |||||| ||||    
T  45879288 aaatcagtcctcatacaaaatataaaggggaatttcaatgttagtgcacaaa-tgagaatctatgtttaattttgatttaatcaggaaaacaatttcaat 45879386  T
Q  249 aagtaaatatataatgacacaccttata-----------aacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaa 337  Q
    ||||||| |||||| ||||||||||||            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  45879387 aagtaaagatataacgacacaccttatgggcaaatgtgcaacaaatgtgcaatacaccatataatctgacgtggcatggattaaatacacaaatgctcaa 45879486  T
Q  338 tgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcct 399  Q
    |||||| ||||||||||| |||        |||||||||| |||||| ||||||||||||||    
T  45879487 tgattggccatttaactttacc-agaaaagtcattctcatgacttcagcatagaattttcct 45879547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 132 - 357
Target Start/End: Complemental strand, 44881061 - 44880831
Alignment:
Q  132 taaaactaaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttga 224  Q
    |||||||||| ||||||||||||||||||| | |||||| |||||||||| || |||||||      ||||| ||| || |||||||||||||| |||||    
T  44881061 taaaactaaactttaccttattacaaatcaatcctcatataaaatattaaggggaatttcaatcctagtgcacaaa-tgtgaatctatgtttaattttga 44880963  T
Q  225 tttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaata 324  Q
    |||||||||||||||||||| |||||||||| |||||||||||| |||||| | |||||||| |||||||||||| ||||||||||||||||||||||||    
T  44880962 tttaatcagggacacaattgtaataagtaaagatataatgacac-ccttatgagcaaatgtgcaatacaccatattatctgacgtgacatggattaaata 44880864  T
Q  325 cacaaattctcaatgattgaccatttaacttca 357  Q
    || ||||  ||||||||||||||||||||||||    
T  44880863 cataaatgttcaatgattgaccatttaacttca 44880831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 38 - 303
Target Start/End: Complemental strand, 26000897 - 26000626
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    ||||||| |||| ||||||| |||||||||||| || |||||||||||||| ||||||| |||||||||| | | || ||||| |  |||||| ||||||    
T  26000897 tcagaaatttgaattttttgtaaaagttattttgttgaatcaatagtataactgtcgatatcatgtcagctactatcctactgatagaccactctaaaac 26000798  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaagg-------aatttcagtgcaaaaaatgagaatctatgtttaactttgatttaat 230  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||| ||       ||||| ||||| | |||||||||||||||||||| |||||||||||    
T  26000797 taaactttactttattacaaatcagtactcatacaaaatattaagggaaatttcaattttagtgc-acaaatgagaatctatgtttaattttgatttaat 26000699  T
Q  231 cagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatc 303  Q
    ||  |||||||||||||||||||||   |||||||||||| |||  |  |||| || |||||||| |||||||    
T  26000698 caatgacacaattgcaataagtaaagcgataatgacacactttacgagaaaatatgcaatacaccgtataatc 26000626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 38 - 398
Target Start/End: Original strand, 47930348 - 47930714
Alignment:
Q  38 tcagaaaattgacttttttgcaaaag--ttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaa 135  Q
    |||||||||||||||||||| ||||   ||||||| ||||   |||||||||| || ||||||||| ||||  |||||| |  | ||| |||||| ||||    
T  47930348 tcagaaaattgacttttttgaaaaaaaattattttgtttagctaatagtataactgccgatgtcatatcagttagtgtcctgttagtggaccactctaaa 47930447  T
Q  136 actaaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgattta 228  Q
    |||||  ||||| |||||||||||||||  | |||||||||||||| || |||||||      ||||| ||| ||||||||||||||||| |||||||||    
T  47930448 actaagctttactttattacaaatcagtcattatacaaaatattaaggggaatttcaatcttagtgcacaaa-tgagaatctatgtttaattttgattta 47930546  T
Q  229 atcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacaca 328  Q
    || ||||||||||||||||||||||||   ||||||||||  ||||   ||||| ||| |||||||||||||||| ||  | ||||||||||||||||||    
T  47930547 atgagggacacaattgcaataagtaaaggaataatgacacgtcttagggacaaaggtgcaatacaccatataatc-gatataacatggattaaatacaca 47930645  T
Q  329 aattctcaatgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcc 398  Q
    |||  ||||||||||  ||||||||||||||        ||||| |||| ||||||||||||||||||||    
T  47930646 aatgttcaatgattggtcatttaacttcacc-agaaaaatcattttcatgacttcaccatagaattttcc 47930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 26 - 298
Target Start/End: Original strand, 7758106 - 7758372
Alignment:
Q  26 tctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaa 125  Q
    |||||| || ||| |||||||| ||||||||| |||||||||||| |||| ||||||||||||||| |||| |||||||||| ||||            |    
T  7758106 tctacggtgaaattagaaaatttacttttttgaaaaagttattttgtttagtcaatagtataattgccgatatcatgtcagctagtgg-----------a 7758194  T
Q  126 ccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaaggaatttca------gtgcaaaaaatgagaatctatgtttaac 219  Q
     |||| |||||||||  |||| ||| ||||||||||||  ||||||||||||| |  |||||||||      ||||| ||| |||||||||||||||||     
T  7758195 gcactctaaaactaagctttatctttttacaaatcagtcttcatacaaaatataaggggaatttcaatcttagtgcacaaa-tgagaatctatgtttaat 7758293  T
Q  220 tttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccata 298  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||   |||||||  |||||||||||    
T  7758294 tttgatttaattagggacacaattgcaataagtaaagatataatgacgcaccttatgggcaaatgtacaatacaccata 7758372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 38 - 309
Target Start/End: Complemental strand, 51878474 - 51878203
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||||||| ||||||  |||||||||||  |||| | |||||||| |||| ||||||||||||||| | |||   |||||||   |||| |||||     
T  51878474 tcagaaaattga-ttttttcaaaaagttatttagtttagttaatagtatgattgccgatgtcatgtcagctactgt---actggtgggtcactctaaaat 51878379  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaaggaatttc------agtgcaaaaaatgagaatctatgtttaactttgatttaatc 231  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||  |||||||      ||||| | |||||||||||||||||||| ||| ||||||||    
T  51878378 taaactttaccttattacaattcagtactcatacaaaatattaagagaatttcaatcttagtgc-ataaatgagaatctatgtttaatttttatttaatc 51878280  T
Q  232 agggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgt 309  Q
     | ||||||||||||||||||||  ||||||| |||||| ||||  |||||| || |||| |||||||||| ||||||    
T  51878279 ggagacacaattgcaataagtaacaatataataacacacattatggacaaatatgcaata-accatataatttgacgt 51878203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 53811865 - 53811958
Alignment:
Q  238 acaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaat 331  Q
    ||||||||| |||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53811865 acaattgcattaagtaaagatataatgacacaccttatgtacaaatgtggaatacaccatataatctgacgtgacatggattaaatacataaat 53811958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 42664014 - 42664142
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||| | ||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||  || | ||||||| ||| |||||||||||    
T  42664014 tgactttttagaaaaagttattttatttagtcaatagtatagttgttgatgtcatgtcagctagtgtctttgtgataaaccactgtaagactaaatttta 42664113  T
Q  147 ccttattacaaatcagttctcatacaaaa 175  Q
    | ||||||||||||||| ||| |||||||    
T  42664114 ctttattacaaatcagtcctcgtacaaaa 42664142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 211 - 338
Target Start/End: Complemental strand, 42204530 - 42204405
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| |  |||| || |||||||||||||||| || |||    
T  42204530 atgtttaattttgatttaatcagg-actcaattgcaataagtaaagatata-tgacacaccttatgagtaaatatgcaatacaccatataatccgatgtg 42204433  T
Q  311 acatggattaaatacacaaattctcaat 338  Q
    |||| |||||||||||||||| ||||||    
T  42204432 acatagattaaatacacaaatgctcaat 42204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 240 - 343
Target Start/End: Complemental strand, 4556702 - 4556595
Alignment:
Q  240 aattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatg----gattaaatacacaaattctc 335  Q
    ||||| |||||||||| |||||||||||||| |||| | |||||||| ||||| ||||||||||||||||||||||     ||||||||||||||| |||    
T  4556702 aattgtaataagtaaagatataatgacacacattatgagcaaatgtgcaatacgccatataatctgacgtgacatgaattaattaaatacacaaatactc 4556603  T
Q  336 aatgattg 343  Q
    ||||||||    
T  4556602 aatgattg 4556595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 5125575 - 5125442
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| |||||||||||||||||| |||||  ||||||||  ||| ||||||||| ||||||||  || || |||||| ||| |||||| | ||    
T  5125575 tgacttttttgaaaaagttattttatttaaccaataacataattgttaatgccatgtcagctagtgtctttgtgatggaccactgtaagactaaa-tata 5125477  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
     |||||||||||||||| ||| |||||||||||||    
T  5125476 tcttattacaaatcagtcctcttacaaaatattaa 5125442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 48154374 - 48154513
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||| | ||||| ||||| |||||| ||| ||||  ||| ||||||||| ||||||||  || || |||||| ||| ||||||    
T  48154374 aaaaatgacttttttaaaaaaatcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaa 48154473  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| ||||||||||||||| ||||||||||| |||||    
T  48154474 ttttactttattacaaatcagtcctcatacaaaacattaa 48154513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 211 - 324
Target Start/End: Complemental strand, 43485497 - 43485384
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||| |||||||||||||| ||||| ||||||||||| ||||||||||||| ||||    ||||| || ||| ||||||||||||||| |||    
T  43485497 atgtttaattttaatttaatcagggactcaattacaataagtaaaaatataatgacacatcttaggggcaaatatgcaatgcaccatataatctgaagtg 43485398  T
Q  311 acatggattaaata 324  Q
     |||| ||||||||    
T  43485397 gcatgaattaaata 43485384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 29923057 - 29923191
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||  |||||| |||||||||||  ||||||||| || | |||| |||||||||    |||||  || || |||||| |||||||||||||||    
T  29923057 tgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggaccactataaaactaaatttta 29923156  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
    | ||||||||||| ||||||  |||||||||||||    
T  29923157 ctttattacaaataagttcttgtacaaaatattaa 29923191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 29972210 - 29972344
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||  |||||| |||||||||||  ||||||||| || | |||| |||||||||    |||||  || || |||||| |||||||||||||||    
T  29972210 tgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggaccactataaaactaaatttta 29972309  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
    | ||||||||||| ||||||  |||||||||||||    
T  29972310 ctttattacaaataagttcttgtacaaaatattaa 29972344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 36689784 - 36689674
Alignment:
Q  71 atttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatcagttctcata 170  Q
    |||||| |||||  ||| |||| |||||||||||||| ||||||||  || || |||||  |||||||||| ||||| ||||||||||| ||| ||||||    
T  36689784 atttaaccaataacatagttgttgatgtcatgtcagctagtgtcttgttgatggaccaccgtaaaactaaactttactttattacaaataagtcctcata 36689685  T
Q  171 caaaatattaa 181  Q
    |||||||||||    
T  36689684 caaaatattaa 36689674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 181
Target Start/End: Complemental strand, 11019847 - 11019700
Alignment:
Q  33 tgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccacttt 132  Q
    |||| ||| |||| ||| ||||||| |||||| ||||||||||  |||||| || |||||  |||| |||| ||| ||||||||  || || |||||| |    
T  11019847 tgtagtcaaaaaaatgatttttttgaaaaagtcattttatttagccaatagcatgattgtt-atgtaatgttagctagtgtctttgtgatggaccactct 11019749  T
Q  133 aaaactaaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    || ||||||||||| |||||||||||||||| ||| || ||||||||||    
T  11019748 aagactaaattttatcttattacaaatcagtcctcgtataaaatattaa 11019700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 343
Target Start/End: Complemental strand, 54606892 - 54606760
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||| ||||||||| || ||||||||||||||||||| |||||    |||||| ||| |  ||||||| |||||||| ||| || |||| ||    
T  54606892 atgtttaattttaatttaatcaagggcacaattgcaataagtaaaaatatagcagcacaccgtatgagtaaatgtgcaatacaccgtatgatttgacatg 54606793  T
Q  311 acatggattaaatacacaaattctcaatgattg 343  Q
    ||||  |||||||||||||||  ||||||||||    
T  54606792 acatacattaaatacacaaatgttcaatgattg 54606760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 31706507 - 31706568
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgt 103  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||    
T  31706507 aaaactgacttttttgaaaaagttattttgtttaatcaatagtataatttttgatgtcatgt 31706568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 18272154 - 18272218
Alignment:
Q  279 caaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattg 343  Q
    |||||||| |||||||||||||||||||| ||| ||| |||||||||||||||  ||||||||||    
T  18272154 caaatgtgcaatacaccatataatctgacttgatatgaattaaatacacaaatgttcaatgattg 18272218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 47870377 - 47870313
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttat 275  Q
    |||||| | ||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||    
T  47870377 atgtttgattttgatttaatcaaggactcaattgcaatacgtaaagatataatgacacaccttat 47870313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 211 - 328
Target Start/End: Original strand, 48155075 - 48155192
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||| ||||| ||  ||||| ||| | |||||||  ||| | |  || ||| ||| |||    
T  48155075 atgtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcactaaaatttgatgtg 48155174  T
Q  311 acatggattaaatacaca 328  Q
    ||||| ||||||||||||    
T  48155175 acatgcattaaatacaca 48155192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 12121217 - 12121279
Alignment:
Q  119 tggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||||||||| ||| |||||| ||||||||||||||||| | | || ||||||||||||||    
T  12121217 tggtgaaccactataagactaaactttaccttattacaaataactccttatacaaaatattaa 12121279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 5124789 - 5124726
Alignment:
Q  280 aaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattg 343  Q
    ||||||| |||||||| |||||| |||| ||||||  |||||||||||||||  ||||||||||    
T  5124789 aaatgtgcaatacaccgtataatttgacatgacatacattaaatacacaaatgttcaatgattg 5124726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 399
Target Start/End: Original strand, 7327638 - 7327669
Alignment:
Q  368 tcattctcataacttcaccatagaattttcct 399  Q
    ||||||||||||||||||||||||||||||||    
T  7327638 tcattctcataacttcaccatagaattttcct 7327669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 11018600 - 11018554
Alignment:
Q  214 tttaactttgatttaatcagggacacaattgcaataagtaaatatat 260  Q
    ||||| ||||||||||| ||||| |||||||||||||||||| ||||    
T  11018600 tttaattttgatttaattagggatacaattgcaataagtaaaaatat 11018554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 40744200 - 40744262
Alignment:
Q  116 tactggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatat 178  Q
    |||||||  |||||| ||| ||||||  |||||||||||||||||| | ||||||||||||||    
T  40744200 tactggtagaccactctaagactaaacattaccttattacaaatcaatcctcatacaaaatat 40744262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 47871328 - 47871210
Alignment:
Q  63 gttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatcag 162  Q
    |||||||||||||  ||||| ||||| ||| |||||||||||| | |||||| | |||  | | |||| ||| | |||| |||||  | |||||||||||    
T  47871328 gttattttatttagccaataatataactgttgatgtcatgtcaactagtgtcctgctgccggatcactctaagattaaactttacaatgttacaaatcag 47871229  T
Q  163 ttctcatacaaaatattaa 181  Q
    | |||||| ||||||||||    
T  47871228 tcctcatataaaatattaa 47871210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 23165310 - 23165343
Alignment:
Q  43 aaattgacttttttgcaaaagttattttatttaa 76  Q
    ||||||||||||||| ||||||||||||||||||    
T  23165310 aaattgacttttttgaaaaagttattttatttaa 23165343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 328
Target Start/End: Complemental strand, 29896050 - 29895933
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| |||| ||||| ||||  || || ||||| ||  ||||| ||| | |||||||  | |||||  |||||| ||| |||    
T  29896050 atgtttaattttgatttaatcaaggacccaattccaatgggttaaaatatagtggtacaccgtatgagcaaatgtacagtacacggtataatttgatgtg 29895951  T
Q  311 acatggattaaatacaca 328  Q
    ||||| ||||||||||||    
T  29895950 acatgcattaaatacaca 29895933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 8e-78; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 47 - 399
Target Start/End: Original strand, 13876611 - 13876968
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    |||||||||| ||||||||||||| ||||   ||  |||||| |||||||||||||||||| |||||| | |||||| |||||| |||||||||| ||||    
T  13876611 tgacttttttacaaaagttattttgtttagcgaacggtataactgtcgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaacttta 13876710  T
Q  147 ccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacac 239  Q
    |||||||||||||| || ||||||||||||||||| || |||||||      ||||| ||| || |||||||||||||| ||||||||||||| ||| ||    
T  13876711 ccttattacaaatcggtactcatacaaaatattaaggggaatttcaatattagtgcacaaa-tgggaatctatgtttaattttgatttaatcaaggatac 13876809  T
Q  240 aattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatg 339  Q
    ||||||||||| |||| |||||||||||||| ||||   |||||||| |||||||||||| || ||||||| ||| |||||||||||||||| |||||||    
T  13876810 aattgcaataactaaaaatataatgacacactttatgggcaaatgtgtaatacaccatatgatatgacgtggcattgattaaatacacaaatactcaatg 13876909  T
Q  340 attgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcct 399  Q
    ||||| ||||||||||||||        ||||| ||||||||||||||||||||||||||    
T  13876910 attgatcatttaacttcacc-ataaaagtcattttcataacttcaccatagaattttcct 13876968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 26 - 359
Target Start/End: Complemental strand, 16127893 - 16127558
Alignment:
Q  26 tctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaa 125  Q
    ||||||||| | |||||||||||||||||||  ||||||||||||||||| |||||||||| | ||||||||| |||||||  |||||| | | |||| |    
T  16127893 tctacgttgaagtcagaaaattgactttttta-aaaagttattttatttagtcaatagtattactgtcgatgttatgtcagttagtgtcctgcaggtgga 16127795  T
Q  126 ccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaagg-------aatttcagtgcaaaaaatgagaatctatgtttaa 218  Q
    | |||||||||||||| |||||||||||||||| |||| |||||  |||||||||| ||       ||| | |||||| ||| |||||||||||||||||    
T  16127794 ctactttaaaactaaactttaccttattacaaaccagtcctcatttaaaatattaaggggaatctcaatcttagtgcacaaa-tgagaatctatgtttaa 16127696  T
Q  219 ctttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggat 318  Q
     ||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||| |  ||||||| |||||| |||||||||||||||| |||||||    
T  16127695 -tttgatttattcagggaca--attgcaataagtaaacatataatgacacaccttatgagtaaatgtgcaatacatcatataatctgacgtgtcatggat 16127599  T
Q  319 taaatacacaaattctcaatgattgaccatttaacttcacc 359  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  16127598 taaatacacaaatgatcaatgattgaccatttaacttcacc 16127558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 59 - 343
Target Start/End: Complemental strand, 15964444 - 15964154
Alignment:
Q  59 aaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaa 158  Q
    |||| ||||||| ||||  ||||||||||| |||||||||||||||||| |||||| ||||  || |||||| |||||||||||||||||||||||||||    
T  15964444 aaaaattattttgtttagccaatagtataactgtcgatgtcatgtcagctagtgtcctactaatgtaccactctaaaactaaattttaccttattacaaa 15964345  T
Q  159 tcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataag 251  Q
    ||||| |||||| |||||||||| || |||||||      ||||| ||| || |||||||||||||| |||||||||||||||||||||||||  || ||    
T  15964344 tcagtcctcatataaaatattaaggggaatttcaatcttagtgcacaaa-tgtgaatctatgtttaattttgatttaatcagggacacaattgatatcag 15964246  T
Q  252 taaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattg 343  Q
    ||| |||||||||||||| |||||  ||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||| || ||||||||    
T  15964245 taagtatataatgacacatcttatggacaaatgtgcaatacactatataatttgacgtgacatagattaaatacacaaatgcttaatgattg 15964154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 26 - 355
Target Start/End: Complemental strand, 27118703 - 27118372
Alignment:
Q  26 tctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaa 125  Q
    |||||| |||| || ||||||| |||||||||    ||||||| | |||| |||||| ||||| | || |||||| |||||| ||  || | |||||| |    
T  27118703 tctacggtgtagtcggaaaattaacttttttg----agttattgtgtttagtcaataatataactatcaatgtcacgtcagctaggatcctgctggtgga 27118608  T
Q  126 ccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaa 218  Q
     |||| |||||||| | |||||||||||||||||||||  |||||||||||||||| || |||||||      |||||  || |||||||||||||||||    
T  27118607 tcactctaaaactatactttaccttattacaaatcagtcatcatacaaaatattaaggggaatttcaatcttagtgcacgaa-tgagaatctatgtttaa 27118509  T
Q  219 ctttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggat 318  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||| ||||||| |||||||    
T  27118508 ttttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgaacaaatgtgcaatacatcatataatatgacgtggcatggat 27118409  T
Q  319 taaatacacaaattctcaatgattgaccatttaactt 355  Q
    |||||||| |||| ||| |||||| || |||||||||    
T  27118408 taaatacataaatgctccatgattaactatttaactt 27118372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 79 - 358
Target Start/End: Original strand, 10758024 - 10758309
Alignment:
Q  79 aatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatat 178  Q
    |||||||||| || |||||| |||| ||  |||||| | |||||| | |||| |||||||||||||| | ||||||||  |||||  ||||| |||||||    
T  10758024 aatagtataactgccgatgttatgtgagttagtgtcctgctggtggatcactctaaaactaaattttgctttattacacttcagtcatcatataaaatat 10758123  T
Q  179 taa-aggaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacacc 271  Q
    ||| || |||||||      ||||| ||| ||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||     
T  10758124 taagagaaatttcaatcttagtgcacaaa-tgagaatatatgtttaattttgatttaattagggacacaattgcaataagtaaaaatataatgacacaca 10758222  T
Q  272 ttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttcac 358  Q
     ||||  |||||||  ||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  10758223 ctataggcaaatgttcaatacaccatataatctgatgtggcatgaattaaatacacaaatgctcaatgattgaccatttaacttcac 10758309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 199 - 359
Target Start/End: Complemental strand, 16132673 - 16132513
Alignment:
Q  199 aaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccata 298  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||   |||||||| |||||||| ||    
T  16132673 aaatgagaatctatgtttaattttgatttaatcagagacacaattgcaataagtaaagatataatgacacacattatgtgcaaatgtgcaatacaccgta 16132574  T
Q  299 taatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttcacc 359  Q
    |||||| ||||  |||||||||||||||||||| |||||| |||  |||||||||||||||    
T  16132573 taatctcacgttgcatggattaaatacacaaatgctcaataatttgccatttaacttcacc 16132513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 26 - 358
Target Start/End: Complemental strand, 25943573 - 25943237
Alignment:
Q  26 tctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaa 125  Q
    ||||||||| | |||||||||||||||||    |||  ||||||| ||||  ||||||||||||||||||| |||||||| | ||  |  |  ||||| |    
T  25943573 tctacgttgaagtcagaaaattgacttttaa--aaacattattttgtttagccaatagtataattgtcgatctcatgtcaactagcattctgttggtgga 25943476  T
Q  126 ccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaa-aggaatttcagt------gcaaaaaatgagaatctatgtttaa 218  Q
    ||||| ||  ||||||||||| ||||||||||||||||  || ||||||||||||| || ||||||| |      ||| ||| |||||||||||||||||    
T  25943475 ccactctactactaaattttatcttattacaaatcagtcatcgtacaaaatattaagagaaatttcaatcttattgcacaaa-tgagaatctatgtttaa 25943377  T
Q  219 ctttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggat 318  Q
     |||||||||||||   ||| |||| |||||| |||| |||||||| ||| | |||| | |||| ||| ||||||||||||||||||||||||| | |||    
T  25943376 ttttgatttaatcaaaaacaaaattacaataaataaagatataatggcacgcattatcagcaaacgtgcaatacaccatataatctgacgtgacgtcgat 25943277  T
Q  319 taaatacacaaattctcaatgattgaccatttaacttcac 358  Q
    |||||| || ||| |||||| ||||| |||||||||||||    
T  25943276 taaataaactaatgctcaataattgatcatttaacttcac 25943237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 16135688 - 16135545
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    ||||||||||  |||||||| |||||||||||| ||||   |||||||||| |||||||||||||||| | |||||| |||||||| |||||| ||||||    
T  16135688 tcagaaaatttgcttttttgaaaaagttattttgtttagctaatagtataactgtcgatgtcatgtcaactagtgtcatactggtggaccactctaaaac 16135589  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  16135588 taaactttaccctattacaaatcagttctcatacaaaatattaa 16135545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 125 - 328
Target Start/End: Original strand, 31804854 - 31805063
Alignment:
Q  125 accactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaaggaa-tttca------gtgcaaaaaatgagaatctatgttta 217  Q
    |||||| ||||| |||| |||||||||||||||| || |||||||| |||||||||| |||| |||||      ||||| ||| ||||||||||||||||    
T  31804854 accactataaaattaaactttaccttattacaaaccaattctcatataaaatattaagggaaatttcaatcttagtgcataaa-tgagaatctatgttta 31804952  T
Q  218 actttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatgga 317  Q
    | |||||||||||||| ||||||||| ||| ||||||| ||||||||||| |  ||||   |||||||| ||||||||||||||||| ||||| ||| ||    
T  31804953 attttgatttaatcagtgacacaatttcaagaagtaaagatataatgacatatgttatcggcaaatgtgcaatacaccatataatctaacgtggcataga 31805052  T
Q  318 ttaaatacaca 328  Q
    |||||||||||    
T  31805053 ttaaatacaca 31805063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 211 - 399
Target Start/End: Complemental strand, 421579 - 421387
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||| ||||||||  ||| | |||||  ||||||| |||| ||  |||||| |||| ||    
T  421579 atgtttaattttgatttaatcaaggacacaattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaactgtataatttgacatg 421480  T
Q  311 acatggattaaatacacaaattctcaatgattgaccatt----taacttcaccnnnnnnnntcattctcataacttcaccatagaattttcct 399  Q
    ||||  |||||||||||||||  ||||||||||| ||||    | |||||| |        ||||||||||||||||| ||||||||||||||    
T  421479 acatacattaaatacacaaatgttcaatgattgatcattctcatgacttcagcaaaaaaagtcattctcataacttcatcatagaattttcct 421387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 47555111 - 47554968
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| |||||||||||| ||||| ||||||||||| ||| || | ||||||| | |||||| | || ||  |||||| ||| | |||| ||||    
T  47555111 tgacttttttgaaaaagttattttgtttaaccaatagtataactgttgaggccatgtcaactagtgtcctgctagtagaccactctaagagtaaacttta 47555012  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa-aggaattt 189  Q
    |||||||||||||||||  |||||||||||||||| ||||||||    
T  47555011 ccttattacaaatcagtcatcatacaaaatattaagaggaattt 47554968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 21263907 - 21264025
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||  ||||| ||| |||||||||  |||||||  |||||| ||| |||    
T  21263907 atgtttaattttgatttaatcaaggacacaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacattataatttgatgtg 21264006  T
Q  311 acatggattaaatacacaa 329  Q
    ||||  |||||| ||||||    
T  21264007 acattcattaaacacacaa 21264025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 3120548 - 3120688
Alignment:
Q  41 gaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaa 140  Q
    ||||| ||||||||||  |||| ||||||| ||||| ||||| ||||| ||| ||||  ||||||   |||||| |  ||||| |||||| ||| | |||    
T  3120548 gaaaactgacttttttaaaaaaattattttgtttaaccaataatataactgttgatgctatgtcaattagtgtcctcttggtggaccactctaagattaa 3120647  T
Q  141 attttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    | ||||||||||||||||||||| ||||||||| |||||||    
T  3120648 actttaccttattacaaatcagtcctcatacaatatattaa 3120688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 212 - 348
Target Start/End: Original strand, 17695870 - 17696012
Alignment:
Q  212 tgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacacct------tataaacaaatgtggaatacaccatataatctg 305  Q
    ||||||| |||||||||||||  ||| ||||| |||||||||||  |||||||||||||||      ||| ||||||| |  ||| |||||||| |||||    
T  17695870 tgtttaattttgatttaatcaaagactcaattacaataagtaaagttataatgacacacctacaccttatgaacaaatatacaatgcaccatatgatctg 17695969  T
Q  306 acgtgacatggattaaatacacaaattctcaatgattgaccat 348  Q
    |||||  ||| |||||||||| ||||  |||||||||||||||    
T  17695970 acgtggtatgaattaaatacataaatattcaatgattgaccat 17696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 422339 - 422205
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| |||||| ||||||||||| |||||  ||| | || ||| |||||||||| | ||||||  || || |||||| ||  |||||| ||||    
T  422339 tgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggaccactctacgactaaacttta 422240  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
    | ||||||||| | ||| |||||||||||||||||    
T  422239 ctttattacaacttagtcctcatacaaaatattaa 422205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 5500707 - 5500596
Alignment:
Q  49 acttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttacc 148  Q
    ||||||||| |||||||||||| ||||   |||||||||| | |||||||||||||||| ||||| |   | ||| | |||| |||||||||||||||||    
T  5500707 acttttttgaaaaagttattttgtttagctaatagtataactatcgatgtcatgtcagctagtgt-tctgtcgtggatcactctaaaactaaattttacc 5500609  T
Q  149 ttattacaaatca 161  Q
    |||||| ||||||    
T  5500608 ttattataaatca 5500596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 28012253 - 28012123
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaata--agtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacg 308  Q
    |||||||| ||||||||||||||| | ||||||  ||||  |||||| ||||| |  |||| ||||  | |||||||| ||||||||||||||| | | |    
T  28012253 atgtttaattttgatttaatcagg-atacaattataatataagtaaagatatagtagcacatcttaggagcaaatgtgcaatacaccatataatttaatg 28012155  T
Q  309 tgacatggattaaatacacaaattctcaatga 340  Q
    ||||||| ||||||||||||||| ||||||||    
T  28012154 tgacatgcattaaatacacaaatactcaatga 28012123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 28013056 - 28012925
Alignment:
Q  50 cttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttacct 149  Q
    |||||||| ||||||||||||  |||  |||||| |||||||| |||||||||||||| |||||||| ||| |  ||||    || | |||| |||||||    
T  28013056 cttttttgaaaaagttattttggttagccaatagcataattgttgatgtcatgtcagctagtgtcttgctgatagaccatcgcaagagtaaactttacct 28012957  T
Q  150 tattacaaatcagttctcatacaaaatattaa 181  Q
    |||||||||||||| ||| || ||| ||||||    
T  28012956 tattacaaatcagtcctcgtaaaaactattaa 28012925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 34491440 - 34491500
Alignment:
Q  284 gtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattga 344  Q
    |||||||||| | |||||||||| ||| ||||||||||||||||||||  | |||||||||    
T  34491440 gtggaatacatcttataatctgatgtggcatggattaaatacacaaatgtttaatgattga 34491500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 4146712 - 4146753
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataa 88  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  4146712 tgacttttttgaaaaagttattttgtttaatcaatagaataa 4146753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 399
Target Start/End: Original strand, 4964067 - 4964096
Alignment:
Q  370 attctcataacttcaccatagaattttcct 399  Q
    ||||||||||||||||||||||||||||||    
T  4964067 attctcataacttcaccatagaattttcct 4964096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 42663251 - 42663284
Alignment:
Q  43 aaattgacttttttgcaaaagttattttatttaa 76  Q
    ||||||||||||||| ||||||||||||||||||    
T  42663251 aaattgacttttttgaaaaagttattttatttaa 42663284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 26970891 - 26970835
Alignment:
Q  33 tgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataat 89  Q
    |||| |||| ||| ||||||||||| |||||||||||||||| | |||||| |||||    
T  26970891 tgtagtcagtaaactgacttttttgaaaaagttattttattttaccaatagcataat 26970835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 8e-75; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 38 - 341
Target Start/End: Complemental strand, 3038770 - 3038462
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||||||||||||||  |||| ||||||| ||||  |||||||| |||||  |||||||||||| | |||||||| |||||| |||||| ||||||    
T  3038770 tcagaaaattgacttttttaaaaaaattattttgtttagccaatagtagaattgctgatgtcatgtcaacaagtgtcttgctggtggaccactctaaaac 3038671  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaaggaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatc 231  Q
    |||| ||||||||||||||||||| |  |||||||||||||||| |||||||||      ||||| ||| || ||||||| |||||| ||||||||||||    
T  3038670 taaactttaccttattacaaatcaatcatcatacaaaatattaagggaatttcaatcttagtgcataaa-tgggaatctaagtttaattttgatttaatc 3038572  T
Q  232 agggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaat 331  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||| ||||| |||||||  ||||||||||||||||||  |||||||| ||||||    
T  3038571 agggacacaattgcaataagtaaagatataatgacacaccttatggacagatgtgcaatacactgtataatctgacgtgacataaattaaatagacaaat 3038472  T
Q  332 tctcaatgat 341  Q
     |||||||||    
T  3038471 gctcaatgat 3038462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 42 - 355
Target Start/End: Original strand, 4108602 - 4108918
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||||||||||||||| |||||||||||| |||| |||||| |||||||| || | |||||||||| |||||| |  ||||| ||||||||||||||||     
T  4108602 aaaattgacttttttgaaaaagttattttgtttagtcaataatataattgccgttatcatgtcagctagtgtcatgttggtggaccactttaaaactaag 4108701  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaaaggaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcaggg 235  Q
     |||| ||||||||||| ||||  ||||||||||||| |  |||||||||      ||||| ||| ||||||||||||||||| ||||||||||||||||    
T  4108702 ctttatcttattacaaaacagtcttcatacaaaatataaggggaatttcaattttagtgcacaaa-tgagaatctatgtttaattttgatttaatcaggg 4108800  T
Q  236 acacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctc 335  Q
    |||||||||||||||||||| |||||| ||||||||||||   |||||||| ||||||||||||||  ||||||| |||  |||||||||||||||  ||    
T  4108801 acacaattgcaataagtaaagatataacgacacaccttatgggcaaatgtgcaatacaccatataa--tgacgtggcattaattaaatacacaaatattc 4108898  T
Q  336 aatgattgaccatttaactt 355  Q
    ||||||||  ||||||||||    
T  4108899 aatgattggtcatttaactt 4108918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 40 - 359
Target Start/End: Complemental strand, 7291082 - 7290757
Alignment:
Q  40 agaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaacta 139  Q
    |||||||| ||||||||| |||| ||||||| ||||  ||||||||||| |||||||||||| ||| | |||||| |  | |||||||||| ||||||||    
T  7291082 agaaaattaacttttttgaaaaaattattttgtttaggcaatagtataactgtcgatgtcatatcaactagtgtcctgtttgtgaaccactctaaaacta 7290983  T
Q  140 aattttaccttattacaaatcagttctcatacaaaatattaa-aggaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatca 232  Q
    || |||| |||||||||||||| | ||||||||||||||||| ||||||||||      ||||| ||| ||| ||||||||| ||| |||||||||||||    
T  7290982 aactttatcttattacaaatcaatcctcatacaaaatattaagaggaatttcaatcttagtgcacaaa-tgaaaatctatgtctaattttgatttaatca 7290884  T
Q  233 gggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaatt 332  Q
    || | |||||||||||||||||| ||||||| | ||| |||||    ||||||  ||||| |||||||||||||||||||||| ||||||  |||||||     
T  7290883 ggaatacaattgcaataagtaaagatataataatacatcttatgggaaaatgtctaatacgccatataatctgacgtgacatgaattaaacgcacaaatg 7290784  T
Q  333 ctcaatgattgaccatttaacttcacc 359  Q
     ||||||||| |||||||||| |||||    
T  7290783 atcaatgattcaccatttaacgtcacc 7290757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 38 - 325
Target Start/End: Original strand, 18756350 - 18756642
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||||||| ||||| | |||||||||||| ||||  ||||| |||||||| |||||| |||| ||| | |||| |||||||| |||||| ||||||    
T  18756350 tcagaaaattgattttttggaaaaagttattttgtttagccaataatataattgccgatgttatgttagctaatgtcctactggtggaccactctaaaac 18756449  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaagg-------aatttcagtgcaaaaaatgagaatctatgtttaactttgatttaat 230  Q
    |||  |||||||||||||||||| || ||||||||||||||||| ||       ||| | ||||| | ||| | |||| |||| |||  ||| ||| |||    
T  18756450 taatctttaccttattacaaatctgtcctcatacaaaatattaaggggaattaaaatcttagtgc-acaaaggggaatatatgcttacttttaattgaat 18756548  T
Q  231 cagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatac 325  Q
    || |||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |||| |||||||||| ||||||| ||||||||||||||    
T  18756549 catggacacaattgcaataagtaaagatataatgacacatcttatagacaaatgtgcaatagaccatataatttgacgtg-catggattaaatac 18756642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 40 - 253
Target Start/End: Original strand, 23176472 - 23176690
Alignment:
Q  40 agaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaacta 139  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||||||  |||| |||||||||| |||||| |  || || |||||| ||||||||    
T  23176472 agaaaattgacttttttgaaaaagttattttgtttattcaatagtataatttccgatatcatgtcagctagtgtcatgttgatggaccactctaaaacta 23176571  T
Q  140 aattttaccttattacaaatcagttctcatacaaaatattaaaggaatttc------agtgcaaaaaatgagaatctatgtttaactttgatttaatcag 233  Q
    |  |||| |||||||||||| ||| |||||||||||||| |  ||||||||      ||||| | |||||||||||||||||||| ||||||||||||||    
T  23176572 agctttatcttattacaaattagtcctcatacaaaatataaggggaatttcaatcttagtgc-acaaatgagaatctatgtttaattttgatttaatcag 23176670  T
Q  234 ggacacaattgcaataagta 253  Q
    ||||||||||||||||||||    
T  23176671 ggacacaattgcaataagta 23176690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 129 - 355
Target Start/End: Original strand, 6267279 - 6267508
Alignment:
Q  129 ctttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactt 221  Q
    ||||||||||||| |||| ||||||||||||||||  |||||||||||||||| || |||||||      ||||| ||| ||  ||||||||||||| ||    
T  6267279 ctttaaaactaaactttatcttattacaaatcagtcatcatacaaaatattaaggggaatttcaatcttagtgcacaaa-tgcaaatctatgtttaattt 6267377  T
Q  222 tgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaa 321  Q
    ||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||| | ||||||  ||||||||| |||| |||||||| ||||  ||||    
T  6267378 tgatttaatcaaggacataattgcaataagtaaagatataataacacaccttatagataaatgtataatacaccaaataacctgacgtggcatgacttaa 6267477  T
Q  322 atacacaaattctcaatgattgaccatttaactt 355  Q
    |||||||||| |||   | |||||||||||||||    
T  6267478 atacacaaatactc---ggttgaccatttaactt 6267508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 28220711 - 28220869
Alignment:
Q  33 tgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccacttt 132  Q
    |||| ||||||| ||||| |||||| |||||||||||| |||| |||||||||||||||||||| ||||||  || | |||| |  ||||| |||||| |    
T  28220711 tgtagtcagaaatttgacatttttgaaaaagttattttgtttagtcaatagtataattgtcgatatcatgtttgctaatgtcatgttggtggaccactct 28220810  T
Q  133 aaaactaaattttaccttattacaaatcagttctcatacaaaatattaaaggaatttca 191  Q
    ||||||||  |||| |||||||||||||||| |||||||||||||| |  |||||||||    
T  28220811 aaaactaagctttatcttattacaaatcagtcctcatacaaaatataaggggaatttca 28220869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 34686131 - 34685992
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| |||||||||||| |||| | |||||||||| |||  |||||||||||  ||||||| | | |||  |||||| ||| |||||| ||||    
T  34686131 tgacttttttggaaaagttattttttttagttaatagtataactgttaatgtcatgtcaagcagtgtcctgccggtagaccactctaagactaaacttta 34686032  T
Q  147 ccttattacaaatcagttctcatacaaaatattaaaggaa 186  Q
    | ||||||||||||||| ||||||||||||||||| ||||    
T  34686031 ctttattacaaatcagtcctcatacaaaatattaagggaa 34685992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 212 - 342
Target Start/End: Original strand, 35735844 - 35735973
Alignment:
Q  212 tgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtga 311  Q
    ||||||| ||| ||||||||||| ||||||||| |||| ||||| ||||| || |||||||||| | |||||||| ||||||||||||||| | ||| ||    
T  35735844 tgtttaatttttatttaatcagg-acacaattgtaataggtaaagatatagtggcacaccttatgagcaaatgtgcaatacaccatataatttaacggga 35735942  T
Q  312 catggattaaatacacaaattctcaatgatt 342  Q
    ||   ||||||||||||||| ||||||||||    
T  35735943 cacacattaaatacacaaatgctcaatgatt 35735973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 1879088 - 1879208
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||| ||||| ||  ||||  ||| |||||||||  |||||||  |||||| ||| |||    
T  1879088 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 1879187  T
Q  311 acatggattaaatacacaaat 331  Q
    ||||  |||||||||||||||    
T  1879188 acattcattaaatacacaaat 1879208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 30380989 - 30381079
Alignment:
Q  224 atttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacat 314  Q
    |||||||||||| |||||||  |||||||||| ||||||||||||| |||||||  |||| || |||| || |||||||||||||||||||    
T  30380989 atttaatcaggggcacaattataataagtaaagatataatgacacatcttataagtaaatatgcaatatacgatataatctgacgtgacat 30381079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 1835247 - 1835367
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| ||||||| |||| ||||||||| ||||| ||  ||||  ||| |||||||||  |||||||  |||||| ||| |||    
T  1835247 atgtttaattttgatttaatcaaggacacatttgcgataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 1835346  T
Q  311 acatggattaaatacacaaat 331  Q
    ||||  |||||||||||||||    
T  1835347 acattcattaaatacacaaat 1835367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 238 - 341
Target Start/End: Complemental strand, 34463575 - 34463472
Alignment:
Q  238 acaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaa 337  Q
    |||||| ||||||||||| ||||||||||||||| |||   |||| ||| ||||||| ||||||| ||| |||  |||||||||||||| ||||| ||||    
T  34463575 acaattacaataagtaaagatataatgacacaccatatgttcaaacgtgcaatacacaatataatgtgaagtggtatggattaaatacataaattttcaa 34463476  T
Q  338 tgat 341  Q
    ||||    
T  34463475 tgat 34463472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 30650923 - 30651078
Alignment:
Q  43 aaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgt--------catgtcagccagtgtcttactggtgaaccactttaa 134  Q
    ||||||||||||||| |||||||||||| |||| ||||| |||||| ||| || |         ||||||| |||||||  | |||||| |||||| |||    
T  30650923 aaattgacttttttgaaaaagttattttgtttagtcaattgtataagtgttgaggggacttctacatgtcaaccagtgttctgctggtggaccactctaa 30651022  T
Q  135 aactaaattttaccttattacaaatcagttctcatacaaaatattaa-aggaattt 189  Q
     | |||| |||||||||||||||||||||  |||||| ||||||||| ||||||||    
T  30651023 gattaaactttaccttattacaaatcagtcatcatactaaatattaagaggaattt 30651078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 23176704 - 23176773
Alignment:
Q  288 aatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttcacc 359  Q
    |||||||||||||||  ||||||||||| ||||| |||||||||  ||||||||||  ||||||||||||||    
T  23176704 aatacaccatataat--gacgtgacatgcattaagtacacaaatattcaatgattggtcatttaacttcacc 23176773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 8151371 - 8151422
Alignment:
Q  308 gtgacatggattaaatacacaaattctcaatgattgaccatttaacttcacc 359  Q
    |||||||||||||||| |||||||  ||||||||||  ||||||||||||||    
T  8151371 gtgacatggattaaatgcacaaatattcaatgattggtcatttaacttcacc 8151422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 1872689 - 1872738
Alignment:
Q  132 taaaactaaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| ||||||||| |||||| |||||||| || ||||||||||||||    
T  1872689 taaaaccaaattttactttattataaatcagtccttatacaaaatattaa 1872738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 5018587 - 5018554
Alignment:
Q  43 aaattgacttttttgcaaaagttattttatttaa 76  Q
    ||||||||||||||| ||||||||||||||||||    
T  5018587 aaattgacttttttgaaaaagttattttatttaa 5018554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 47 - 399
Target Start/End: Original strand, 24510 - 24866
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||  |||||||||||| || |  ||||||||||| || ||||||||||||||| |||||| |  ||||| | |||| || ||||||| ||||    
T  24510 tgacttttttagaaaagttattttgttaagccaatagtataactgccgatgtcatgtcagctagtgtcatgttggtggatcactctagaactaaacttta 24609  T
Q  147 ccttattacaaatcagttctcatacaaaatattaaaggaa-tttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacac 239  Q
    |||||||||||||||||  || ||||||||||||| |||| |||||      ||||| ||| ||||||||||||||||  ||||||||||||||||||||    
T  24610 ccttattacaaatcagtcatcgtacaaaatattaagggaaatttcaatcttagtgcacaaa-tgagaatctatgtttat-tttgatttaatcagggacac 24707  T
Q  240 aattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatg 339  Q
    ||||| |||||||||||||||||| ||| |||||||   |||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  24708 aattggaataagtaaatatataataacataccttatgggcaaatgcgcaatacaccatataatctgacgtgacatgaattaaatacacaaatgctcaatg 24807  T
Q  340 attgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcct 399  Q
    ||||||||||||| ||||||        |||||||||||||||  |||||||||||||||    
T  24808 attgaccatttaatttcacc-agaaaaatcattctcataactttgccatagaattttcct 24866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 50 - 342
Target Start/End: Complemental strand, 5941 - 5645
Alignment:
Q  50 cttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttacct 149  Q
    |||||||| |||| |||||||||||||| |||||||||| ||| || ||||||||||  |||||||  || ||| |||||| |||||||||| |||||||    
T  5941 cttttttggaaaaattattttatttaattaatagtataactgtggaagtcatgtcagttagtgtctg-ctagtggaccactctaaaactaaactttacct 5843  T
Q  150 tattacaaatcagttctcatacaaaatattaaaggaatttc------agtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaatt 243  Q
    ||||| |||||||||||||||||||||||||||| ||||||      | || || ||||| ||||| |||||||| ||||||||||| ||||||| ||||    
T  5842 tattataaatcagttctcatacaaaatattaaagaaatttcgatcttaatg-aacaaatgcgaatccatgtttaattttgatttaatgagggacataatt 5744  T
Q  244 gcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgatt 342  Q
    |||||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||    
T  5743 gcaataaggaaatatataatgacacaccttataggcaaatgtgcaatacaccatataatctaacatgacatgaattaaatacacaaatgctcaatgatt 5645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 5e-73; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 40 - 359
Target Start/End: Original strand, 22954998 - 22955322
Alignment:
Q  40 agaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaacta 139  Q
    |||||||| ||||||||  |||||||||||| ||||  | ||||||||| |   | ||||||||  || | |||| | |||||| |||||| ||||||||    
T  22954998 agaaaattaacttttttaaaaaagttattttgtttagcctatagtataactactgctgtcatgtt-gctattgtcctgctggtggaccactctaaaacta 22955096  T
Q  140 aattttaccttattacaaatcagttctcatacaaaatattaaaggaa-tttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatca 232  Q
    || ||||||||||||||||||||||||||||||||||||||| |||| |||||      ||||| ||| |||||||||||||||||  |||||||||| |    
T  22955097 aactttaccttattacaaatcagttctcatacaaaatattaagggaaatttcaatcttagtgcacaaa-tgagaatctatgtttaatgttgatttaataa 22955195  T
Q  233 gggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaatt 332  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||||||     
T  22955196 gggacacaattgcaataagtaaagatacaatgacataccttatgagcaaatgtgcaatacaccatataatttgacgtgacatggattaaatacacaaatg 22955295  T
Q  333 ctcaatgattgaccatttaacttcacc 359  Q
     ||||| ||||||||||||||||||||    
T  22955296 ttcaataattgaccatttaacttcacc 22955322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 33 - 357
Target Start/End: Complemental strand, 49002594 - 49002266
Alignment:
Q  33 tgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccacttt 132  Q
    |||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||| | |||| | |||||| |||||| |    
T  49002594 tgtagtcagaaaactgatttttttgaaaaagttattttatttaatcaatagtataattgtcgatgtcatagcagctaatgtcctgctggtggaccactct 49002495  T
Q  133 aaaactaaattttaccttattacaaatcagttctcatacaaaatattaaagg-------aatttcagtgcaaaaaatgagaatctatgtttaactttgat 225  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||       ||| | ||||| | ||||| |||||||||||||| ||||||    
T  49002494 aaaactaaactttacctcattacaaatcagtcctcatacaaaatattaaggggaattttaatcttagtgc-acaaatgggaatctatgtttaattttgat 49002396  T
Q  226 ttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatac 325  Q
    ||||||||  |||||||||||||||||||| ||||||||  ||||||||     ||||||| |||||||||||||||||||  ||  |||||||||||||    
T  49002395 ttaatcagacacacaattgcaataagtaaagatataatg--acaccttaagggaaaatgtgcaatacaccatataatctgatatggtatggattaaatac 49002298  T
Q  326 acaaattctcaatgattgaccatttaacttca 357  Q
    |||||| |||||||||||  ||||| ||||||    
T  49002297 acaaatactcaatgattgttcatttcacttca 49002266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 40 - 355
Target Start/End: Original strand, 4618440 - 4618761
Alignment:
Q  40 agaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaacta 139  Q
    |||||||||||||||||| |||| ||||||| ||||| |||| |||||| |||||||||||||| ||| | |||  | |||||| |||||| ||||||||    
T  4618440 agaaaattgacttttttgaaaaacttattttgtttaaccaatggtataactgtcgatgtcatgtgagctaatgttctgctggtggaccactctaaaacta 4618539  T
Q  140 aattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatca 232  Q
    || |||| |||| |||||||||||  |||||||||||||||| || |||||||      ||||| ||| ||||||||||||||||| ||||||||||| |    
T  4618540 aactttatcttactacaaatcagtcatcatacaaaatattaaggggaatttcaatcttggtgcacaaa-tgagaatctatgtttaattttgatttaatga 4618638  T
Q  233 gggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaatt 332  Q
    || | ||||||||||||| ||||||||||||||||||  |||| |||||||||| ||||||||||||||| ||| | |||||| |||||||||||||||     
T  4618639 ggtatacaattgcaataaataaatatataatgacacattttatgaacaaatgtgcaatacaccatataatttgaagcgacatgaattaaatacacaaatg 4618738  T
Q  333 ctcaatgattgaccatttaactt 355  Q
     |||||||||   ||||||||||    
T  4618739 ttcaatgattagtcatttaactt 4618761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 42 - 398
Target Start/End: Original strand, 23402059 - 23402419
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||||||||||| ||||  ||||||||||| || |||||| |||||||| |||||| |  ||| | |||||| ||||||||||    
T  23402059 aaaactgacttttttaaaaaagttattttgtttagccaatagtataactgccgatgttatgtcagctagtgtcatgttgggggaccactctaaaactaaa 23402158  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaaaggaa-tttcagt------gcaaaaaatgagaatctatgtttaactttgatttaatcagg 234  Q
     |||| | ||||||||||||||  || ||||||||||||| |||| |||||||      ||| ||| |||||||| |||||||  |||||||||||||||    
T  23402159 ctttatcctattacaaatcagtcatcgtacaaaatattaagggaaatttcagtcttagtgcacaaa-tgagaatcaatgtttat-tttgatttaatcagg 23402256  T
Q  235 gacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattct 334  Q
    |||||||||| |||||||||||||||||||||| | |||||  ||||||| | ||||||||||||||| |||||||||||| |||||||||||| ||  |    
T  23402257 gacacaattgaaataagtaaatatataatgacatatcttatggacaaatgcgcaatacaccatataatatgacgtgacatgaattaaatacacagatgtt 23402356  T
Q  335 caatgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcc 398  Q
    |||||||||||||||||||||||||        |||||||||| ||||| ||||||||||||||    
T  23402357 caatgattgaccatttaacttcacc-agaaaagtcattctcatgacttcgccatagaattttcc 23402419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 50 - 359
Target Start/End: Original strand, 37853990 - 37854304
Alignment:
Q  50 cttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttacct 149  Q
    |||||||| |||||||||||| |||| ||||||||||||  || | ||||| |||||| ||||||||  ||||| |||||| ||||| |||| ||||| |    
T  37853990 cttttttggaaaagttattttgtttagtcaatagtataaccgtaggtgtcacgtcagctagtgtcttgttggtggaccactctaaaattaaactttactt 37854089  T
Q  150 tattacaaat-cagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaa 241  Q
    |||| ||||| |||| ||||||||||||||||| || |||||||      ||| | ||| ||| ||||||||||||| ||||||||||||||||||||||    
T  37854090 tattccaaattcagtcctcatacaaaatattaaggggaatttcaatcttagtgtacaaa-tgaaaatctatgtttaattttgatttaatcagggacacaa 37854188  T
Q  242 ttgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgat 341  Q
    ||||||| |||||| ||||||  ||| ||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||    
T  37854189 ttgcaatcagtaaagatataa--acataccttatgagcaaatgtgcaatacaccatataatgtgacgtgacatggattaaatacacaaatgctcaataat 37854286  T
Q  342 tgaccatttaacttcacc 359  Q
    ||||||||||| ||||||    
T  37854287 tgaccatttaatttcacc 37854304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 77 - 355
Target Start/End: Complemental strand, 5781841 - 5781560
Alignment:
Q  77 tcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaat 176  Q
    ||||||||||||||| |||| |||||||||| |||||| |  ||||| |||||||||||||||| |||||| |||||||||||||||  |||||||||||    
T  5781841 tcaatagtataattgccgatatcatgtcagctagtgtcatgttggtgcaccactttaaaactaagttttactttattacaaatcagtcatcatacaaaat 5781742  T
Q  177 attaaaggaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacac 270  Q
    || || |||||||||      ||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||     
T  5781741 ataaagggaatttcaatcttagtgcacaaa-tgagaatctatgtttaattttgatttaatcaaggacacaattgcaataaataaagatataatgacacat 5781643  T
Q  271 cttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaactt 355  Q
     ||||   ||||| || ||||||||||||||  ||||||||||||||||||||||||||||  | ||||||||| ||||||||||    
T  5781642 tttatggtcaaatatgcaatacaccatataa--tgacgtgacatggattaaatacacaaatatttaatgattgatcatttaactt 5781560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 7743313 - 7742959
Alignment:
Q  20 gagacctctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttact 119  Q
    ||||| |||||| || | |||||||  |||||||| |  |||||||||||| |||| |||||||||||| ||||||||||||||| || | |||  |  |    
T  7743313 gagacttctacggtggagtcagaaatctgacttttctagaaaagttattttgtttagtcaatagtataactgtcgatgtcatgtcggctaatgtaatgtt 7743214  T
Q  120 ggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaag-gaatttcagt---------------gcaaa-aaat 202  Q
    | || |||||| |||||||||| |||||||||||||||| |||  |||||| |||||||||||| | |||||| |               | ||| ||||    
T  7743213 gatggaccactctaaaactaaactttaccttattacaaagcagccctcatataaaatattaaagagcatttcaatcttagtgtataaatggaaaacaaat 7743114  T
Q  203 gagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataat 302  Q
    |||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||||| ||||||  ||||||||  |||||||||||||||    
T  7743113 gagaatctatgtttaattttaatttaatcaggggcacaattgcaataagtaaagatataatgacacgccttatggacaaatgtacaatacaccatataat 7743014  T
Q  303 ctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttca 357  Q
    || ||||||||| |||||||||||||||| |||||||||||| ||||| ||||||    
T  7743013 ctaacgtgacatagattaaatacacaaatactcaatgattgatcattttacttca 7742959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 86 - 350
Target Start/End: Original strand, 8133290 - 8133560
Alignment:
Q  86 taattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaagg- 184  Q
    |||| ||| |||||||||||||  ||||||| ||||||||||||| |||||||||| |||||||||||||||||||||  ||||  |||||||||| ||     
T  8133290 taatagtcaatgtcatgtcagctggtgtcttgctggtgaaccactctaaaactaaactttaccttattacaaatcagtcttcatgtaaaatattaagggg 8133389  T
Q  185 aatttcagt------gcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaa 278  Q
    ||||||| |      ||| ||| | |||||||| |||||| ||||||||||| |||||| ||||||||||||||||  ||||||||||| |||||||||     
T  8133390 aatttcaatcttactgcacaaa-taagaatctacgtttaattttgatttaattagggacgcaattgcaataagtaatgatataatgacagaccttataag 8133488  T
Q  279 caaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccattt 350  Q
    |||| ||| ||||||||||||||||||||||| | || ||||||||||||||| || ||||||||| |||||    
T  8133489 caaacgtgcaatacaccatataatctgacgtgtcttgaattaaatacacaaatgcttaatgattgatcattt 8133560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 38 - 359
Target Start/End: Complemental strand, 4902685 - 4902378
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||||||||||||||| |||||||||||| |||| |||||||||||| || |||| |||||| ||  | |||| | |  || ||||||| ||||||    
T  4902685 tcagaaaattgacttttttgaaaaagttattttgtttagtcaatagtataactgccgatatcatgttagttattgtcctgccagtaaaccactctaaaac 4902586  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttc------agtgcaaaaaatgagaatctatgtttaactttgatttaat 230  Q
    |||| ||||||||||||||||| ||| ||||||||||||||||| || ||||||      |||||| ||  || |||||||||||||| |||||||||||    
T  4902585 taaactttaccttattacaaattagtactcatacaaaatattaaggggaatttctatcttagtgcataatttg-gaatctatgtttaattttgatttaat 4902487  T
Q  231 cagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaa 330  Q
    ||||||||| |||||||||||                    ||||   ||||||||  |||||||||||||||||||||||||||||||||||||| |||    
T  4902486 cagggacactattgcaataag--------------------ttatgggcaaatgtgctatacaccatataatctgacgtgacatggattaaatacataaa 4902407  T
Q  331 ttctcaatgattgaccatttaacttcacc 359  Q
    | |||||| ||||| ||||||| ||||||    
T  4902406 tgctcaataattgatcatttaaattcacc 4902378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 211 - 338
Target Start/End: Complemental strand, 19786470 - 19786343
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| | ||||||||| ||| || |||||||| |||||||    
T  19786470 atgtttaattttgatttaatcaaggactcaattgcaataagtaaagatataatgacacaccttacagacaaatgtgcaatgcatcatataatatgacgtg 19786371  T
Q  311 acatggattaaatacacaaattctcaat 338  Q
     |||| ||||||||||||||| ||||||    
T  19786370 gcatgaattaaatacacaaatgctcaat 19786343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 125 - 269
Target Start/End: Complemental strand, 40382167 - 40382016
Alignment:
Q  125 accactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttc------agtgcaaaaaatgagaatctatgttta 217  Q
    |||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||| || ||||||      ||||| | |||||| ||||||||||||    
T  40382167 accactctaaaactaaactttaccttattacaaatcagtccgcatacaaaatattaagggaaatttcaatcttagtgc-acaaatgataatctatgttta 40382069  T
Q  218 actttgatttaatcagggacac-aattgcaataagtaaatatataatgacaca 269  Q
    | ||| ||||||| |||||||| ||||| |||||||||| |||||||||||||    
T  40382068 atttttatttaattagggacacaaattgtaataagtaaagatataatgacaca 40382016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 25470782 - 25470643
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||||| ||||| ||||| |||||| ||| ||||  ||| ||||||||| ||||||||  || || |||||  ||| ||||||    
T  25470782 aaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggaccaccgtaacactaaa 25470683  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| ||||||||||||||| ||| |||||||||||||    
T  25470682 ttttactttattacaaatcagtcctcgtacaaaatattaa 25470643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 8759592 - 8759459
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| |||||| ||||||||||  |||||  |||||||| |||||||||||||| ||||||||  || || |||||| ||| | |||| | ||    
T  8759592 tgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttttgatggaccactgtaagattaaa-tata 8759494  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
     |||| |||||||| || ||| |||||||||||||    
T  8759493 tcttagtacaaatcggtcctcttacaaaatattaa 8759459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 10674928 - 10675085
Alignment:
Q  26 tctacgttgtaatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtc--agccagtgtcttactggtg 123  Q
    |||||| || |||||| ||| | ||||||||  |||| ||||||| |||| |||||||||||| |||  ||| ||||||  | | |||||  | || |||    
T  10674928 tctacggtgcaatcaggaaactaacttttttaaaaaaattattttgtttattcaatagtataactgttaatgccatgtctcaactagtgttctgcttgtg 10675027  T
Q  124 aaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
     | |||| ||| |||||| ||||| ||||||||||| ||| |||||||||||||||||    
T  10675028 gatcactctaagactaaactttactttattacaaattagtcctcatacaaaatattaa 10675085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 8758476 - 8758392
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacacc 295  Q
    |||||||| ||| ||||||||| |  ||||||||||||||||||| ||||| |  |||||| ||| || ||||||| ||||||||    
T  8758476 atgtttaattttaatttaatcaagagcacaattgcaataagtaaaaatatagtagcacaccgtatgaataaatgtgcaatacacc 8758392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 47190218 - 47190127
Alignment:
Q  238 acaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaa 329  Q
    |||||||||||||||||| ||||| ||  ||||| ||| |||||||||  |||||||  |||||| ||| |||||||  |||||| ||||||    
T  47190218 acaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacactataatttgatgtgacattcattaaacacacaa 47190127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 59 - 358
Target Start/End: Original strand, 2266561 - 2266865
Alignment:
Q  59 aaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaa 158  Q
    |||||||||||| ||||  ||||||||||| |||||||| ||||||||| |||||| | |||||| ||| || ||||| |||| ||||| ||||||||||    
T  2266561 aaaagttattttgtttagccaatagtataactgtcgatgccatgtcagctagtgtcctgctggtggacccctctaaaa-taaactttacattattacaaa 2266659  T
Q  159 tcagttctcatacaaaatattaaaggaa-tttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataag 251  Q
    ||||| ||||||||||||||||| |||| |||||      ||||| ||| || |||||||||||||| |||||||||||||  | || | ||||||||||    
T  2266660 tcagtcctcatacaaaatattaagggaaatttcaatcttagtgcacaaa-tgggaatctatgtttaattttgatttaatcaaagtcatagttgcaataag 2266758  T
Q  252 taaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccattta 351  Q
    |||| |||||||||||||||||||| ||||||||| |||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||| |||||    
T  2266759 taaagatataatgacacaccttatagacaaatgtgtaatacaccatgtaatctaacgtggcatggattaaatacacaaatgctcaatgattgacgattta 2266858  T
Q  352 acttcac 358  Q
    |||||||    
T  2266859 acttcac 2266865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 38 - 357
Target Start/End: Complemental strand, 17612699 - 17612375
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||||| | ||||||| |||||||||||||||||  ||||||||||| |||||||||||||||||| |||||| |  ||||| |||||| ||||||    
T  17612699 tcagaaaattcatttttttgaaaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagtgtcctgttggtggaccactctaaaac 17612600  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaa-aggaatttcagt----gca-aaaaatgagaatctatgtttaactttgatttaatc 231  Q
    |||||||||||||||||||||| ||| |||||| ||||||| ||  ||||||||| |    ||| | |||||  ||||||||||||| ||||||||||||    
T  17612599 taaattttaccttattacaaattagtcctcatagaaaatataaaggggaatttcaatcttagcacacaaatggcaatctatgtttaattttgatttaatc 17612500  T
Q  232 agggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaat 331  Q
      ||||| |||||||||||||||| ||  |||||||||||||||   |||||||| |||||| ||| ||||||| ||||||||| ||| |||||||||||    
T  17612499 taggacataattgcaataagtaaagatgcaatgacacaccttattggcaaatgtgaaatacatcatttaatctggcgtgacatgaatt-aatacacaaat 17612401  T
Q  332 tctcaatgattgaccatttaacttca 357  Q
     || ||||||||||||||||||||||    
T  17612400 gcttaatgattgaccatttaacttca 17612375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 42 - 359
Target Start/End: Complemental strand, 9743948 - 9743626
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||||||||||||||| |||||||||||| ||||| ||||| |||||||||| | ||||||| | | ||||||   |||||| | |||| ||||||||||    
T  9743948 aaaattgacttttttgaaaaagttattttgtttaaccaataatataattgtcaacgtcatgttaactagtgtc---ctggtggatcactctaaaactaaa 9743852  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaaagg-------aatttcagtgcaaaaaatgagaatctat--gtttaactttgatttaatca 232  Q
    |||||| |||||||||| |||| ||||||||||||||||| ||       ||| | |||||| ||| ||||||| |||  |||||| |||||||||||||    
T  9743851 ttttacattattacaaaccagtcctcatacaaaatattaaggggaacataaatcttagtgcacaaa-tgagaatatatatgtttaattttgatttaatca 9743753  T
Q  233 gggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaatt 332  Q
     | ||| |||||||||||||||| || |||||| |||| ||||  | ||||||| ||||||||||||||| |||||| |||||||||||||||||||||     
T  9743752 agaacataattgcaataagtaaagatttaatgaaacactttatggaaaaatgtgcaatacaccatataatatgacgttacatggattaaatacacaaatg 9743653  T
Q  333 ctcaatgattgaccatttaacttcacc 359  Q
     ||||| ||||  ||||||| ||||||    
T  9743652 ttcaataattggtcatttaatttcacc 9743626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 205 - 354
Target Start/End: Complemental strand, 1012489 - 1012339
Alignment:
Q  205 gaatctatgtttaactttgatttaatcagggacacaa-ttgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatc 303  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||   |||||||| ||||||||||||||||    
T  1012489 gaatctatgtttaattttgatttaatcagggacacaaattgcaataagtaaagatataatgacacaccttatgggcaaatgtgcaatacaccatataatc 1012390  T
Q  304 tgacgtgacatggattaaatacacaaattctcaatgattgaccatttaact 354  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  1012389 tgacgtgacatggattaaatacacaaatactcgatgattaaccatttaact 1012339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 38 - 315
Target Start/End: Complemental strand, 2570843 - 2570560
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||| ||| ||||||  |||||||||| | ||||  ||||| |||||||||||||||||||| ||| |||||  | |||||| |||||| ||||||    
T  2570843 tcagaaaactgatttttttagaaaagttattatgtttagacaataatataattgtcgatgtcatgttagctagtgttctgctggtggaccactctaaaac 2570744  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaag-gaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaat 230  Q
    |||| ||||||||||||||||||| | |||| |||||||||||| | ||||||||      ||||| |||  || ||||||||||||  |||||||||||    
T  2570743 taaactttaccttattacaaatcattcctcaaacaaaatattaaggtgaatttcaatcttagtgcacaaatgga-aatctatgtttacttttgatttaat 2570645  T
Q  231 cagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatg 315  Q
     ||||||||||||||||||| |||| |||||||||||||| |||||  ||||| |  ||||||||||||||||||||||||||||    
T  2570644 tagggacacaattgcaataaataaagatataatgacacactttatagccaaatatacaatacaccatataatctgacgtgacatg 2570560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 199 - 359
Target Start/End: Original strand, 54995649 - 54995809
Alignment:
Q  199 aaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccata 298  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||  ||||||||| |||||| ||||    
T  54995649 aaataagaatctatatttaattttgatttaatcagggacacaattgcaataagtaaagatataaagacacacattatggacaaatgtgcaatacatcata 54995748  T
Q  299 taatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttcacc 359  Q
    ||| ||||| ||||||||||||||||| |||||   ||||||||| |||||||||||||||    
T  54995749 taacctgacatgacatggattaaatacgcaaatgtacaatgattggccatttaacttcacc 54995809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 2708196 - 2707998
Alignment:
Q  79 aatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatat 178  Q
    ||||||||||||| |||| |||||||||| |||||| |  ||||| |||||| |||||||||  |||| |||||||||||||||  |||||||||||||     
T  2708196 aatagtataattgccgatatcatgtcagctagtgtcatgttggtggaccactctaaaactaagctttatcttattacaaatcagccctcatacaaaatag 2708097  T
Q  179 taaaggaatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacacct 272  Q
     |  |||||||||      ||||| ||| |||||||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  2708096 aaggggaatttcaatcttagtgcacaaa-tgagaatccatgtttaattttgatttaatcagggactcaattgcaataagtaaagatataatgacacacct 2707998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 33036064 - 33036196
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||  |||||||| ||||||| ||||||||| ||||     
T  33036064 atgtttaattttgatttaatcagagactcaattgcaataagtaaagatataatgacaaaccttataggcaaatgtgcaatacacaatataatctaacgta 33036163  T
Q  311 acatggattaaatacacaaattctcaatgattga 344  Q
    ||||||||||||||||  ||| ||||||||||||    
T  33036164 acatggattaaataca-gaatgctcaatgattga 33036196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 51204723 - 51204636
Alignment:
Q  257 atataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattga 344  Q
    ||||||||||||||||||| | |||||||| ||| ||||||||||||||| |||||||||||||||||||||||  |||||| |||||    
T  51204723 atataatgacacaccttattagcaaatgtgcaatgcaccatataatctgatgtgacatggattaaatacacaaaagctcaataattga 51204636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 17513008 - 17513126
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||| |  ||| ||||| |||||| |||| |||||||||||||| |||||  || ||||| || |||| ||||||||||||| |    
T  17513008 atgtttaattttgatttaattatagactcaattacaataaataaagatataatgacacacattatatgcagatgtgcaacacactatataatctgacgcg 17513107  T
Q  311 acatggattaaatacacaa 329  Q
    ||||| |||||||||||||    
T  17513108 acatgaattaaatacacaa 17513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 257 - 396
Target Start/End: Original strand, 20097395 - 20097537
Alignment:
Q  257 atataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccat----ttaa 352  Q
    ||||||||||||| |||||| |||||| || ||||||| ||||||||||||||| |||| ||||||||||||||| |  ||||||||| |||    ||||    
T  20097395 atataatgacacatcttatagacaaatatgcaatacactatataatctgacgtggcatgaattaaatacacaaatgcggaatgattgatcatagggttaa 20097494  T
Q  353 cttcaccnnnnnnnntcattctcataacttcaccatagaatttt 396  Q
    |||||||        |||||||||| ||||||||||||||||||    
T  20097495 cttcacc-agaaaagtcattctcatgacttcaccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 22729896 - 22729777
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||| ||||||| ||||| ||||||||||| || ||||| || |||||| ||| | |||||||| |||||||| |||||| ||| |||    
T  22729896 atgtttaattttgattcaatcagg-acacagttgcaataagttaagatatagtggcacaccatatgagcaaatgtgcaatacaccgtataatttgatgtg 22729798  T
Q  311 acatggattaaatacacaaat 331  Q
     |||| |||||||||||||||    
T  22729797 gcatgcattaaatacacaaat 22729777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 342
Target Start/End: Original strand, 22756794 - 22756924
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||| ||||||| || |||||| |||||||||| ||||| || ||| |  ||| | |||||||| |||||||| |||||| ||| |||    
T  22756794 atgtttaattttgattcaatcagg-acgcaattggaataagtaaagatatagtggcacgctgtatgagcaaatgtgcaatacaccgtataatttgatgtg 22756892  T
Q  311 acatggattaaatacacaaattctcaatgatt 342  Q
     |||| ||||||||||||||| ||||||||||    
T  22756893 gcatgcattaaatacacaaatactcaatgatt 22756924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 2704628 - 2704550
Alignment:
Q  279 caaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttcacc 359  Q
    |||||||| |||||||||||||||  |||||||| || |||||||||||||||  ||||||||||| ||||||||||||||    
T  2704628 caaatgtgcaatacaccatataat--gacgtgacgtgaattaaatacacaaatattcaatgattgatcatttaacttcacc 2704550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 348
Target Start/End: Original strand, 28293124 - 28293232
Alignment:
Q  240 aattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctcaatg 339  Q
    |||||||||||||||| ||||||| ||||| ||||||   ||||||| |||||| |||||||| ||| ||  |||||||||||||||   || |||||||    
T  28293124 aattgcaataagtaaagatataataacacatcttataggtaaatgtgcaatacatcatataatttgatgtagcatggattaaatacattgatactcaatg 28293223  T
Q  340 attgaccat 348  Q
    |||||||||    
T  28293224 attgaccat 28293232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 5914957 - 5915096
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||||| ||||| ||||| |||||| | | ||||  ||  ||||||||| ||||||||  || || |||||| ||| ||||||    
T  5914957 aaaaatgacttttttaaaaaagtcattttgtttaaccaatagcaaagttgttcataccatgtcagctagtgtctttgtgatggaccactgtaacactaaa 5915056  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| ||||||||||| ||| |||||| ||||||||||    
T  5915057 ttttactttattacaaattagtcctcataaaaaatattaa 5915096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 49878993 - 49878892
Alignment:
Q  84 tataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaaag 183  Q
    ||||||||| |||||||||||| | |||||||  |||||| |||| | ||| |||||| |||||||||||| ||||||||  |||||||||||||||| |    
T  49878993 tataattgttgatgtcatgtcaactagtgtctg-ctggtggaccattctaagactaaactttaccttattataaatcagtcatcatacaaaatattaagg 49878895  T
Q  184 gaa 186  Q
    |||    
T  49878894 gaa 49878892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 51959989 - 51959922
Alignment:
Q  257 atataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaata 324  Q
    |||||||||||||| ||||   |||||||| |||||||||||||||||||||||| || |||||||||    
T  51959989 atataatgacacactttatgggcaaatgtgcaatacaccatataatctgacgtgatatagattaaata 51959922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 5915657 - 5915731
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgt 285  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||| ||||| ||  ||||| ||||| |||||||    
T  5915657 atgtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatataagcaaatgt 5915731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 181
Target Start/End: Complemental strand, 14246548 - 14246414
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| |||||| ||||||||||  |||||| |||||| |  ||| |||||||||   ||||||  || || |||||| ||| |||||||||||    
T  14246548 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggaccactataagactaaatttta 14246449  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
    | ||||||||||| ||| ||   ||||||||||||    
T  14246448 ctttattacaaataagtccttgaacaaaatattaa 14246414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 37793570 - 37793452
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||| |||||||||  ||||||||||||||||||||| ||||| ||  ||||| ||| |||||||||  |||||||  |||||| ||| | |    
T  37793570 atgtttaattttaatttaatcaaagacacaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacactataatttgatgag 37793471  T
Q  311 acatggattaaatacacaa 329  Q
    ||||  |||||| ||||||    
T  37793470 acattcattaaacacacaa 37793452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 211 - 325
Target Start/End: Complemental strand, 47237048 - 47236934
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| || ||||||||||||  | ||||||||||||||||| || ||||||||||| | ||    |||| || || |||||||||||| |||||||    
T  47237048 atgtttaatttcgatttaatcaggtgcgcaattgcaataagtaaaaatctaatgacacacatcatgggtaaatctgcaaaacaccatataatttgacgtg 47236949  T
Q  311 acatggattaaatac 325  Q
      |||||||||||||    
T  47236948 taatggattaaatac 47236934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 5812753 - 5812633
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| |||||||||||||  ||||||||||||||||||||| ||| | |   ||| | ||| | |||||||  ||||| | ||||||| ||| ||     
T  5812753 atgtttaattttgatttaatcaatgacacaattgcaataagtaaaaataaagttgtacatcatatgagcaaatgtacaatacgcaatataatttgatgtt 5812654  T
Q  311 acatggattaaatacacaaat 331  Q
    ||||| |||||||||||||||    
T  5812653 acatgcattaaatacacaaat 5812633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 54995016 - 54995068
Alignment:
Q  125 accactttaaaactaaattttaccttattacaaatcagttctcatacaaaata 177  Q
    |||||| ||||||||| |||||| ||||||||||||||| |||||||||||||    
T  54995016 accactctaaaactaacttttactttattacaaatcagtcctcatacaaaata 54995068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 1012596 - 1012529
Alignment:
Q  94 gatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaatca 161  Q
    |||||||||||||| |||||  | || ||| |||| | ||||||||||||||||||||||||||||||    
T  1012596 gatgtcatgtcagctagtgtactgctagtggaccattctaaaactaaattttaccttattacaaatca 1012529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 28292430 - 28292486
Alignment:
Q  125 accactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| ||| |||||| ||||||||||||||||||| |  ||||||||||||||||    
T  28292430 accactctaagactaaactttaccttattacaaatcaataatcatacaaaatattaa 28292486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 9409589 - 9409522
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcag 106  Q
    |||||||| ||||||||||| || |||||||||  ||| |||||||||||| | | |||||||||||||    
T  9409589 tcagaaaactgacttttttgaaagagttattttgattagtcaatagtataact-ttgatgtcatgtcag 9409522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 33255621 - 33255572
Alignment:
Q  214 tttaactttgatttaatcagggacacaattgcaataagtaaatatataatga 265  Q
    ||||||||||||||||| ||  |||||||||||||||||||| |||| ||||    
T  33255621 tttaactttgatttaataag--acacaattgcaataagtaaagatatgatga 33255572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 5e-67; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 42 - 355
Target Start/End: Original strand, 11083845 - 11084158
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||||| ||||||||| ||||||||||||||||| | ||||||||||||||| || |||||||||| |||||| |  | |   |||||| |||||||||     
T  11083845 aaaatttacttttttgaaaaagttattttatttagttaatagtataattgtcaatatcatgtcagctagtgtcgtgatag---accactctaaaactaag 11083941  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaaaggaatttcagtgcaaa-----aaatgagaatctatgtttaactttgatttaatcaggga 236  Q
     |||| |||||||||||||||| || ||||||||||| |  ||||||||| |   ||     |||||||||||||||||||| |||||||||||||| ||    
T  11083942 ctttatcttattacaaatcagtccttatacaaaatataaggggaatttcaatcttaatgaacaaatgagaatctatgtttaattttgatttaatcagaga 11084041  T
Q  237 cacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaattctca 336  Q
    ||||||||||||||||||| |||||||||||||||||||   |||||||| ||||||||||||||  ||||||||||||||||||||||| ||||  |||    
T  11084042 cacaattgcaataagtaaagatataatgacacaccttatgggcaaatgtgtaatacaccatataa--tgacgtgacatggattaaatacataaatattca 11084139  T
Q  337 atgattgaccatttaactt 355  Q
    |||||||  ||||||||||    
T  11084140 atgattggtcatttaactt 11084158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 40 - 399
Target Start/End: Complemental strand, 19632112 - 19631748
Alignment:
Q  40 agaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagcc--agtgtcttactggtgaaccactttaaaac 137  Q
    |||||||||| ||||||  |||||||||||| |||   ||||||||||| |||||||||||||||| |   |||||| | |||||| |||||| ||||||    
T  19632112 agaaaattgatttttttcaaaaagttattttgtttggacaatagtataactgtcgatgtcatgtcaccaggagtgtcctgctggtggaccactctaaaac 19632013  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaat 230  Q
    ||| |||||||||||||  |||   | ||||  ||||||||| | || |||||||      ||||| ||| ||||||| ||| ||||| |||||||||||    
T  19632012 taagttttaccttattattaattgatcctca--caaaatattgaggggaatttcaatcttagtgcacaaa-tgagaatttatttttaattttgatttaat 19631916  T
Q  231 cagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaa 330  Q
    ||| ||||| ||||||||||||||| ||||||||| ||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  19631915 cagagacacgattgcaataagtaaagatataatgaaacaccttataggcaaatgtgcaatacaccatataatctaacgtgacatggattaaatacacaaa 19631816  T
Q  331 ttctcaatgattgaccatttaacttcaccnnnnnnnntcattctcataacttcaccatagaattttcct 399  Q
    |  ||||||||||  ||||||||||||||        ||||||| || |||||||||||||||||||||    
T  19631815 tgttcaatgattggtcatttaacttcacc-agaaaagtcattcttatgacttcaccatagaattttcct 19631748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 42 - 358
Target Start/End: Original strand, 26301609 - 26301932
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    ||||||||| |||||| |||| |||||||||||| ||||| ||||||||| |||| ||||||| || |||||| |  |||||  ||||| ||||| |||     
T  26301609 aaaattgacatttttgaaaaaattattttatttagtcaat-gtataattgccgatatcatgtcggctagtgtcatgttggtgggccactctaaaattaag 26301707  T
Q  142 ttttaccttatt-acaaatcagttctcatacaaaatat---taaagg-aatttcagt----gcaaa-aaatgagaatctatgtttaactttgatttaatc 231  Q
    ||||| |||||| |||||||||||||||||||||||||   |||||| ||||||| |    | | | |||||||||||||||||||| ||||||||||||    
T  26301708 ttttatcttatttacaaatcagttctcatacaaaatatatataaagggaatttcaatcttagtacacaaatgagaatctatgtttaattttgatttaatc 26301807  T
Q  232 agggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaaatacacaaat 331  Q
    |||||||||||||||||||||||| ||||||||||||| |||||  | |||| || |||||| |||||||  |||||||||||| |||||||||| ||||    
T  26301808 agggacacaattgcaataagtaaagatataatgacacatcttatggataaatatgcaatacatcatataa--tgacgtgacatgaattaaatacataaat 26301905  T
Q  332 tctcaatgattgaccatttaacttcac 358  Q
      ||||||||||  |||||||||||||    
T  26301906 attcaatgattggtcatttaacttcac 26301932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 59 - 321
Target Start/End: Complemental strand, 34994175 - 34993907
Alignment:
Q  59 aaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaattttaccttattacaaa 158  Q
    |||| ||||||| ||||  |||||  |||| ||| ||||||||||| || |||||| | |||||| || | | |||||||||||| || |||||||||||    
T  34994175 aaaaattattttgtttagccaatataataagtgttgatgtcatgtcggctagtgtcatgctggtggactattctaaaactaaattgtatcttattacaaa 34994076  T
Q  159 tcagttctcatacaaaatattaaagg-aatttca------gtgcaaaaaatgagaatctatgtttaactttgatttaatcagggacacaattgcaataag 251  Q
    |||||||| ||| |||||||||| || |||||||      ||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  34994075 tcagttcttatataaaatattaaggggaatttcaatcttagtgcataaa-tgagaatctatgtttaattttgatttaatcaaggacacaattgtaataag 34993977  T
Q  252 taaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtgacatggattaa 321  Q
    |||| ||||||| ||| || ||||  ||||||||| ||||||||||||||||||| |||||||| |||||    
T  34993976 taaagatataataacatacattatggacaaatgtgcaatacaccatataatctgatgtgacatgaattaa 34993907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 4104381 - 4104238
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||||||| ||||||||||| |||||||||||| | |  ||||||||||||||||||||||||||||||  |||||| | |||||| |||||| ||||||    
T  4104381 tcagaaaactgacttttttgaaaaagttattttgtcttgtcaatagtataattgtcgatgtcatgtcagttagtgtcgtgctggtggaccactctaaaac 4104282  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||| ||| ||||||||||||||| |  ||||||||||||||||    
T  4104281 taaactttgccttattacaaatcaatcttcatacaaaatattaa 4104238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 4487743 - 4487882
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||||| ||||| ||||| |||||| ||| ||||  ||| ||||||||| ||||||||  || || |||||| ||| ||||||    
T  4487743 aaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaa 4487842  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| ||||||||||||||| ||||||||||| |||||    
T  4487843 ttttactttattacaaatcagtcctcatacaaaacattaa 4487882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 25441848 - 25441709
Alignment:
Q  42 aaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaa 141  Q
    |||| ||||||||||  |||||| ||||| ||||| |||||| ||| ||||  ||||||||| ||| ||||||||  || || |||||| ||| ||||||    
T  25441848 aaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgtcatgttagctagtgtctttgtgatggaccactgtaacactaaa 25441749  T
Q  142 ttttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||| |||| |||||||||| |||||||||||||||||    
T  25441748 ttttactttatcacaaatcagtcctcatacaaaatattaa 25441709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 30341583 - 30341461
Alignment:
Q  36 aatcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaa 135  Q
    ||||||||||||||||| ||||  ||||||||||| ||||  || |||||||||||  |||||||||| ||| |||||| |  ||||||| |||| ||||    
T  30341583 aatcagaaaattgacttgtttgagaaagttattttgtttagccagtagtataattgctgatgtcatgttagctagtgtcctgatggtgaatcactctaaa 30341484  T
Q  136 actaaattttaccttattacaaa 158  Q
    ||| || ||||||||||||||||    
T  30341483 actgaactttaccttattacaaa 30341461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 18306573 - 18306707
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| ||| || ||||| ||||  |||||| |||| ||| |||| ||||||||| |||||||| ||| || |||||| | | |  ||||||||    
T  18306573 tgacttttttggaaatgtcattttgtttagccaatagaataaatgttgatgccatgtcagctagtgtcttgctgatggaccactgttagatcaaatttta 18306672  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
    ||||||||||||||| | ||| |||||||||||||    
T  18306673 ccttattacaaatcaatcctcgtacaaaatattaa 18306707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 30341221 - 30341124
Alignment:
Q  200 aatgagaatctatgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccat 297  Q
    |||| |||||||| ||||| ||||||||||||| | ||||||||||||||||| || ||||||||||||| |||||   |||||||  ||||||||||    
T  30341221 aatgggaatctatatttaattttgatttaatcatgaacacaattgcaataagtgaagatataatgacacaacttatgggcaaatgtacaatacaccat 30341124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 6613676 - 6613819
Alignment:
Q  38 tcagaaaattgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaac 137  Q
    |||| ||| ||||||||||| |||||||||||| |||| |||||||||||| | |  ||| ||||||| | | ||   | |||||| |||||| ||| ||    
T  6613676 tcaggaaactgacttttttgaaaaagttattttgtttagtcaatagtataagtcttaatgccatgtcaactaatggtctgctggtggaccactctaagac 6613775  T
Q  138 taaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||| || |||||||||||||| | | |||||||||||||||||    
T  6613776 taaacttcaccttattacaaatgaatcctcatacaaaatattaa 6613819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 25441148 - 25441074
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgt 285  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||| ||||| ||  ||||| ||||| |||||||    
T  25441148 atgtttaattttaatttaatcaaggacacaattgcaataagtaaaaatatagtggtacaccatataagcaaatgt 25441074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 4102865 - 4102936
Alignment:
Q  288 aatacaccatataatctgacgtgacatggattaaatacacaaattctcaatgattgaccatttaacttcacc 359  Q
    ||||||||||||||| ||| ||| ||| ||||||||||||||||  |||||||||   ||||||||||||||    
T  4102865 aatacaccatataatatgatgtggcatagattaaatacacaaatgttcaatgattagacatttaacttcacc 4102936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 4103070 - 4103031
Alignment:
Q  238 acaattgcaataagtaaatatataatgacacaccttataa 277  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  4103070 acaattgcaataagtaaaaatataatgacacaccttataa 4103031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 211 - 328
Target Start/End: Original strand, 4488444 - 4488561
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| | |||||||||||| ||||||| ||||| ||  ||||| ||| | |||||||  ||| | |  || ||| ||| |||    
T  4488444 atgtttaattttgatttaatcaagaacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcactaaaatttgatgtg 4488543  T
Q  311 acatggattaaatacaca 328  Q
    ||||| ||||||||||||    
T  4488544 acatgcattaaatacaca 4488561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 398
Target Start/End: Original strand, 7235188 - 7235218
Alignment:
Q  368 tcattctcataacttcaccatagaattttcc 398  Q
    |||||||||||||||||||||||||||||||    
T  7235188 tcattctcataacttcaccatagaattttcc 7235218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 30338564 - 30338515
Alignment:
Q  309 tgacatggattaaatacacaaattctcaatgattgaccatttaacttcac 358  Q
    ||||||||||||||| || |||| |||||||||| | |||||||||||||    
T  30338564 tgacatggattaaatgcataaatgctcaatgattaatcatttaacttcac 30338515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 211 - 349
Target Start/End: Original strand, 8993 - 9131
Alignment:
Q  211 atgtttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacaccatataatctgacgtg 310  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||| ||||||||  ||| | |||||  ||||||| |||| ||  |||||| |||| ||    
T  8993 atgtttaattttgatttaatcaaggacacaattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaactgtataatttgacatg 9092  T
Q  311 acatggattaaatacacaaattctcaatgattgaccatt 349  Q
    ||||  |||||||||||||||  ||||||||||| ||||    
T  9093 acatacattaaatacacaaatgttcaatgattgatcatt 9131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 8233 - 8367
Alignment:
Q  47 tgacttttttgcaaaagttattttatttaatcaatagtataattgtcgatgtcatgtcagccagtgtcttactggtgaaccactttaaaactaaatttta 146  Q
    ||||||||||| |||||| ||||||||||| |||||  ||| | || ||| |||||||||| | ||||||  || || |||||| ||  |||||| ||||    
T  8233 tgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggaccactctacgactaaacttta 8332  T
Q  147 ccttattacaaatcagttctcatacaaaatattaa 181  Q
    | ||||||||| | ||| |||||||||||||||||    
T  8333 ctttattacaacttagtcctcatacaaaatattaa 8367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 12031 - 12113
Alignment:
Q  214 tttaactttgatttaatcagggacacaattgcaataagtaaatatataatgacacaccttataaacaaatgtggaatacacca 296  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||  |||||| || |||||||||    
T  12031 tttaattttgatttaatcaggaacacaattgcaataagtaaatatataatgacacatcttatggacaaatatgcaatacacca 12113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 11443 - 11495
Alignment:
Q  125 accactttaaaactaaattttaccttattacaaatcagttctcatacaaaata 177  Q
    |||||| ||| ||||||||||| |||||||||||||||| |||||||||||||    
T  11443 accactctaagactaaattttatcttattacaaatcagtcctcatacaaaata 11495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 66048 - 65992
Alignment:
Q  125 accactttaaaactaaattttaccttattacaaatcagttctcatacaaaatattaa 181  Q
    |||||||||| |||||| |||||||||||| |||| ||| |||||||||||||||||    
T  66048 accactttaacactaaactttaccttattataaattagtcctcatacaaaatattaa 65992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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