View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18558_low_2 (Length: 446)
Name: NF18558_low_2
Description: NF18558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18558_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 39 - 381
Target Start/End: Complemental strand, 34264722 - 34264380
Alignment:
| Q |
39 |
acatagggccacatgcccacaacaaatagcactattaatttggtggaaaatgaaatgttcttgcatcacgtgtatagtttgggccgggggaaatagcaaa |
138 |
Q |
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| T |
34264722 |
acatagggccacatgcccacaacaaatagcactattaatttggtggaaaatgaaatgttcttgcatcacgtgtatagtttgggccgggggaaatagcaaa |
34264623 |
T |
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| Q |
139 |
ttaaccaatgctacttgttttggaatgaaaatgtcagatagtgaattagttgaatgaatagtcatggaaattggaaaaatctctgctggcaaggtgacca |
238 |
Q |
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| T |
34264622 |
ttaaccaatgctacttgttttggaatgaaaatgtcagatagtgaattagttgaatgaatagtcatggaaattggaaaaatctctgctggcaaggtgacca |
34264523 |
T |
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| Q |
239 |
cacaaaattattgtcttactcataactgtatttcgtttaataaaatcacatttttgttggcaaccatagtttcctaaaatgaagagccgtatactgcgat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34264522 |
cacaaaattattgtcttactcataactgtatttcgtttaataaaatcacatttttgttggcaaccatagtttcctaaaatgaagagccgtatcctgcgat |
34264423 |
T |
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| Q |
339 |
gtttggctaaattagtgtcaaaataaatgagaaaccaatttct |
381 |
Q |
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| T |
34264422 |
gtttggctaaattagtgtcaaaataaatgagaaaccaatttct |
34264380 |
T |
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