View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18558_low_4 (Length: 413)
Name: NF18558_low_4
Description: NF18558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18558_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 54898044 - 54898425
Alignment:
| Q |
18 |
attgtttctcgcactacgtggcaatgctcnnnnnnnattatacgttcatctaatatcatacagaacaagaagaccttagctgtattttggtatagagtaa |
117 |
Q |
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| T |
54898044 |
attgtttctcgcactacgtagcaatgctatttttttattatacgttcatctaatatcatac-gaacaagaagaccttagctgtattttgatatagagtaa |
54898142 |
T |
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| Q |
118 |
atgattcttatttctaaaatttcttatttcataattgttgttggtcaaacgacacttaactgtcgttgtcatttgtctctccaacaataattaagtgtca |
217 |
Q |
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| T |
54898143 |
atgattcttatttctaaaatttcttatttcataattgttgttggtcgaacgacacttaactgtcattgtcatttgtctctccaacaataattaagtgtca |
54898242 |
T |
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| Q |
218 |
tttgccannnnnnn-atcatatgaatcactttttaaacccatttaaaaatatcttggaagtcagctaagttaattgttgttaggggtaaataggtaattt |
316 |
Q |
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| T |
54898243 |
tttgctattttttagatcatatgaatcactttttaaacccatttaaaaatatcttgaaagtcagctaagttaattgttgttaggggtaaataggtaattt |
54898342 |
T |
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| Q |
317 |
taagatggattgaagaatttttgaaagcctaaagattaatacacggttggcaatgatccggtggtatggcgtgatgcttgatg |
399 |
Q |
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| T |
54898343 |
tgagatggattgaagaatttttgaaagcctaaagattaatacacggttggcaatgatccggtggtatagcgtgatgcttgatg |
54898425 |
T |
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