View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18558_low_9 (Length: 274)
Name: NF18558_low_9
Description: NF18558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18558_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 2374078 - 2373986
Alignment:
| Q |
19 |
ccaccactgaagaattaaaatgacttacaaccactaaattggtccttaattaaaaactctggtcattttaatctccaaaatttgcaaatagac |
111 |
Q |
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| T |
2374078 |
ccaccactgaagaattaaaatgacttacaaccactaaattggtccttaattaaaaactctgatcattttaatctccaaaatttgcaagtagac |
2373986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 2373922 - 2373867
Alignment:
| Q |
175 |
tccaactaccactatgcatcatcctcatcgctagcattgtcactatcactatcact |
230 |
Q |
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| T |
2373922 |
tccaactaccactatgcatcatcatcatcgcttgtactgtcactatcactatcact |
2373867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 2373859 - 2373817
Alignment:
| Q |
214 |
tcactatcactatcactccaactccaactcccactcccactgt |
256 |
Q |
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| T |
2373859 |
tcactatcactatcactcccactcccactcccactcccactgt |
2373817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 12126076 - 12126106
Alignment:
| Q |
81 |
tcattttaatctccaaaatttgcaaatagac |
111 |
Q |
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| T |
12126076 |
tcattttaatctccaaaatttgcaaatagac |
12126106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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