View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_high_10 (Length: 448)
Name: NF18559_high_10
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 4286742 - 4286312
Alignment:
| Q |
1 |
tgcatgtagtcaaatttatgattttttgatgtttcgaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatg |
100 |
Q |
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| T |
4286742 |
tgcatgtagtcaaatttatgatttttttatgtttcaaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatg |
4286643 |
T |
|
| Q |
101 |
aattaattgtatgtcatgatcaaacaggtggtcataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatga |
200 |
Q |
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| T |
4286642 |
aatt----gtatgtcatgatcaaacaggtggtcataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatga |
4286547 |
T |
|
| Q |
201 |
acattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtcttatgtccttggttcaatcttcaatataataacttggtggtgag |
300 |
Q |
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| T |
4286546 |
acattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtcttatgtctttggttcaatcttcaatataataacttggtggtgag |
4286447 |
T |
|
| Q |
301 |
tgattgtaacttatgtatttgcttgcagatgagacctctatcgaacttgtagaacatggtactgttatgcccagtgaaaattgaacagacctctactttt |
400 |
Q |
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| T |
4286446 |
tgattgtaacttatgtatttgcttgcagatgagacctctatcgaactagtagaacatggtactgttatgcccggtgaaaattgaacagacctctacgttt |
4286347 |
T |
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| Q |
401 |
atgtgannnnnnnnngctaaggttatgccatgatg |
435 |
Q |
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| T |
4286346 |
atgtgattcttttttgctaaggttatgccatgatg |
4286312 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 17165498 - 17165434
Alignment:
| Q |
194 |
tgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtctt |
258 |
Q |
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|||||||||||||||||||| |||||| || ||| ||||||||||| | |||||| ||| |||| |
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| T |
17165498 |
tgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatctt |
17165434 |
T |
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