View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_high_24 (Length: 239)
Name: NF18559_high_24
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 33410809 - 33410687
Alignment:
| Q |
1 |
tccttttctatattatagtagttaacttagtaaaggttttcatgaattatattggtgattcagtaaataatattgttatattggtgaagtcaatgttttg |
100 |
Q |
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| T |
33410809 |
tccttttctatattatagtagttaacttagtaaaggttttcatgaattatattggtgattcagtaaataatattgttatattgatgaagtcaatgtttta |
33410710 |
T |
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| Q |
101 |
agacataaaatcaggatcgtata |
123 |
Q |
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| T |
33410709 |
agacataaaatcaggatcgtata |
33410687 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 33410369 - 33410273
Alignment:
| Q |
127 |
gtggagattaatttaaagacaaacattaagtcatcaacaagtgtcctaacaaatagcaatgcactgtcctatttgcaaactattttcaatttaaggat |
224 |
Q |
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| T |
33410369 |
gtggagattaatttaaaggcaaacattaagtcatcaacaagtgtcctaacaaataacaatgcactgtcctatttgcaaactattttc-atttaaggat |
33410273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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