View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_high_5 (Length: 588)
Name: NF18559_high_5
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 247 - 371
Target Start/End: Complemental strand, 32678593 - 32678470
Alignment:
| Q |
247 |
gtttttatagtctatgcttggcgaacaatattcattttcattcaatatgatagttaatatttctatttgaatctatggctcgagaatgtctaaccaccac |
346 |
Q |
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| T |
32678593 |
gtttttatagtctatgcttggcgaacaatagtcattttcattcaatataatagttaat-tttctatttgaatctatggctcgagaatgtctaaccaccac |
32678495 |
T |
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| Q |
347 |
atgaaatatacatgcagactcatcc |
371 |
Q |
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| T |
32678494 |
atgaaatatacatgcagactcatcc |
32678470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 441 - 570
Target Start/End: Complemental strand, 32678400 - 32678282
Alignment:
| Q |
441 |
ctttacttttatttatatttaaaactggagcgaatattagaaaagaatggcctaagtccnnnnnnngaaggaaagtgcaaggaaatagacggggagtaga |
540 |
Q |
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| T |
32678400 |
ctttacttttatttatatttaaaactggagcgaatattagaaaagaatggctaaag-----------aaggaaagtgcaagaaaatagacggggagtaga |
32678312 |
T |
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| Q |
541 |
cactaaagcattagtagtgatcaacagaca |
570 |
Q |
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| T |
32678311 |
cactaaagcattagtagtgatcaacagaca |
32678282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 12251644 - 12251709
Alignment:
| Q |
278 |
tcattttcattcaatatgatagttaatatttctatttgaatctatggctcgagaatgtctaaccac |
343 |
Q |
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| T |
12251644 |
tcatgttcattcaatataattgttactatttctatttgaatctatggatggagaatgtctatccac |
12251709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 40180061 - 40180149
Alignment:
| Q |
153 |
aatcacattgaaagctagttctgaaggacacggtggcggagtctctgcaatcattttaaagatcaac-gcttggctgcataaaaatctt |
240 |
Q |
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| T |
40180061 |
aatcacattgaaaacttcttttgaaggacgctgtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctt |
40180149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 38604490 - 38604522
Alignment:
| Q |
97 |
tgtataaacctatactttccaatagcaacacca |
129 |
Q |
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| T |
38604490 |
tgtataaacctatactttccaatagcaacacca |
38604522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 8525513 - 8525550
Alignment:
| Q |
299 |
gttaatatttctatttgaatctatggctcgagaatgtc |
336 |
Q |
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| T |
8525513 |
gttaatatttctattggaatctatggctcgagaatgtc |
8525550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 34501758 - 34501807
Alignment:
| Q |
80 |
cataacagtatcacaaatgtataaacctatactttccaatagcaacacca |
129 |
Q |
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| T |
34501758 |
cataagaggatcacaaatgtatacaccaatactttccaatagcatcacca |
34501807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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