View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18559_high_6 (Length: 537)

Name: NF18559_high_6
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18559_high_6
NF18559_high_6
[»] chr1 (2 HSPs)
chr1 (69-521)||(9798637-9799089)
chr1 (241-476)||(49642865-49643100)
[»] chr8 (1 HSPs)
chr8 (241-476)||(15191182-15191417)
[»] scaffold0164 (2 HSPs)
scaffold0164 (241-476)||(18557-18792)
scaffold0164 (241-476)||(28937-29172)
[»] chr3 (5 HSPs)
chr3 (241-476)||(53976200-53976435)
chr3 (241-476)||(52771131-52771366)
chr3 (412-476)||(31196947-31197011)
chr3 (99-135)||(31197296-31197332)
chr3 (99-135)||(52770984-52771020)
[»] chr6 (3 HSPs)
chr6 (241-475)||(29155505-29155739)
chr6 (412-476)||(26129512-26129576)
chr6 (99-135)||(26129191-26129227)
[»] scaffold0014 (2 HSPs)
scaffold0014 (241-476)||(97591-97826)
scaffold0014 (99-135)||(97940-97976)
[»] chr4 (5 HSPs)
chr4 (241-476)||(13986091-13986326)
chr4 (241-452)||(18252030-18252241)
chr4 (409-472)||(20245905-20245968)
chr4 (84-130)||(20246231-20246277)
chr4 (99-135)||(13985941-13985977)
[»] scaffold0013 (1 HSPs)
scaffold0013 (412-476)||(250708-250772)
[»] chr7 (2 HSPs)
chr7 (412-476)||(16254792-16254856)
chr7 (99-135)||(16254471-16254507)
[»] chr2 (4 HSPs)
chr2 (411-466)||(31187162-31187217)
chr2 (411-466)||(31195222-31195277)
chr2 (411-466)||(31213837-31213892)
chr2 (400-476)||(20044630-20044706)
[»] scaffold0061 (2 HSPs)
scaffold0061 (430-476)||(13861-13907)
scaffold0061 (430-476)||(22919-22965)


Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 69 - 521
Target Start/End: Complemental strand, 9799089 - 9798637
Alignment:
Q  69 atcatcatcaagaagatgatgaacttcatgatggtatcaaagctcttttgagcactgctgcgcatcgctttcttctcggttccttatcgttttcttcttc 168  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9799089 atcatcatcaagaagatgatgaacttcatgatggtatcagagctcttttgagcactgctgcgcatcgctttcttctcggttccttatcgttttcttcttc 9798990  T
Q  169 ttcaccatggtgcatgctaacgctgtcgttaatggcggagcaaatgtggtgcctccgattcaagatccgtctcaacctggcaacgtctatttcgttcatg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798989 ttcaccatggtgcatgctaacgctgtcgttaatggcggagcaaatgtggtgcctccgattcaagatccgtctcaacctggcaacgtctatttcgttcatg 9798890  T
Q  269 cttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagatcgatgcgaagagcacttggagccaggaa 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9798889 cttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcttgggcgagatcgatgcgaagagcacttggagccaggaa 9798790  T
Q  369 taagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtggatc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9798789 taagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcagtgcaacatgcttattcattcgtggatc 9798690  T
Q  469 atgaattcggtgcaacatgccctcaccgttgtgtttgtgttactggtttgagt 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798689 atgaattcggtgcaacatgccctcaccgttgtgtttgtgttactggtttgagt 9798637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 241 - 476
Target Start/End: Complemental strand, 49643100 - 49642865
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||||| ||||| |||| |||||||||||||||| | || ||||| ||  | |||||||||||  | |  ||||| ||||| ||||| |||||| | |    
T  49643100 caacctggtaacgtgtattacgttcatgcttctgatggtccctcttcagtcgccattacaccggttcttagccattcaaattaccattcttgggcgcgtt 49643001  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | ||||||||||| |||||||| | ||| |||| ||||||||| || || |  |||||||||||||| || |||||||||| ||| ||||||||||||||    
T  49643000 ctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttccaacggattttgatccaaatttcaaggcttggaatcg 49642901  T
Q  441 gtgcaacatgcttattcattcgtggatcatgaattc 476  Q
     |||||||||||| | ||||| ||||| ||||||||    
T  49642900 ttgcaacatgcttgtgcattcttggattatgaattc 49642865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 241 - 476
Target Start/End: Original strand, 15191182 - 15191417
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||||| ||||| |||| |||||||||||||||| | || ||||||||  | |||||||||||  | |  ||||| ||||| ||||| |||||| | |    
T  15191182 caacctggtaacgtgtattacgttcatgcttctgatggtccctcttccgtcgccattacaccggttcttagccattcaaattaccattcttgggcgcgtt 15191281  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | ||||||||||| |||||||| | ||| |||| ||||||||| || || |  ||||||||||||||||| |||||||||| ||| ||||||||||||||    
T  15191282 ctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttccaacagattttgatccaaatttcaaggcttggaatcg 15191381  T
Q  441 gtgcaacatgcttattcattcgtggatcatgaattc 476  Q
     |||||||||||| | ||||| ||||| ||||||||    
T  15191382 ttgcaacatgcttgtgcattcttggattatgaattc 15191417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 241 - 476
Target Start/End: Complemental strand, 18792 - 18557
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||||| ||||| |||| |||||||||||||||| | || ||||||||  | |||||||||||  | |  ||||| ||||| ||||| |||||| | |    
T  18792 caacctggtaacgtgtattacgttcatgcttctgatggtccctcttccgtcgccattacaccggttcttagccattcaaattaccattcttgggcgcgtt 18693  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | ||||||||||| |||||||| | ||| |||| ||||||||| || || |  |||||||||||||| || |||||||||| ||| ||||||||||||||    
T  18692 ctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttccaactgattttgatccaaatttcaaggcttggaatcg 18593  T
Q  441 gtgcaacatgcttattcattcgtggatcatgaattc 476  Q
     |||||||||||| | ||||| ||||| ||||||||    
T  18592 ttgcaacatgcttgtgcattcttggattatgaattc 18557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 241 - 476
Target Start/End: Complemental strand, 29172 - 28937
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||||| ||||| |||| ||||||||||| |||| | || ||||||||  | |||||||||||  | |  ||||| ||||| ||||| |||||| | |    
T  29172 caacctggtaacgtgtattacgttcatgcttgtgatggtccctcttccgtcgccattacaccggttcttagccattcaaattaccattcttgggcgcgtt 29073  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | ||||||||||| |||||||| | ||| |||| ||||||||| || || |  |||||||||||||| || ||||||||||  || ||||||||||||||    
T  29072 ctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttccaacggattttgatccaaacttcaaggcttggaatcg 28973  T
Q  441 gtgcaacatgcttattcattcgtggatcatgaattc 476  Q
     |||||||||||| | ||||| ||||| ||||||||    
T  28972 ttgcaacatgcttgtgcattcttggattatgaattc 28937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 241 - 476
Target Start/End: Original strand, 53976200 - 53976435
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||||| ||||| |||| |||||||||||||||| | || ||||| ||  | |||||||| ||  |    ||||| ||||| ||||| |||||| | |    
T  53976200 caacctggtaacgtgtattacgttcatgcttctgatggtccctcttcagtcgccattacaccagttcttggccattcaaattaccattcttgggcgcgtt 53976299  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | ||||| ||||| |||||||| | ||| |||| ||||||||| || || |  |||||||||||||| || |||||||||| ||| ||||||||||||||    
T  53976300 ctatgcggagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttccaacggattttgatccaaatttcaaggcttggaatcg 53976399  T
Q  441 gtgcaacatgcttattcattcgtggatcatgaattc 476  Q
     |||||||||||| | ||||| ||||| ||||||||    
T  53976400 ttgcaacatgcttgtgcattcttggattatgaattc 53976435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 476
Target Start/End: Original strand, 52771131 - 52771366
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||||| ||||| |||| ||||||| |||||||| | ||||| |||||  || |||| ||||| |||||  | || || ||||| || |||||| | |    
T  52771131 caacctggtaacgtgtattacgttcattcttctgatggtccttcctccgtcactgttactccggtattgaacaactcaaactatcactcttgggcgcgtt 52771230  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | ||| |||||||  | ||||  | ||| |||| ||||||||| || || | ||| || ||||| |  || |||||||||||||| || || ||||||||    
T  52771231 caatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcg 52771330  T
Q  441 gtgcaacatgcttattcattcgtggatcatgaattc 476  Q
     |||||||||||| | ||||| ||||||||||||||    
T  52771331 ttgcaacatgcttgtacattcatggatcatgaattc 52771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 476
Target Start/End: Complemental strand, 31197011 - 31196947
Alignment:
Q  412 tttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtggatcatgaattc 476  Q
    |||||||||||||| || || |||||||| |||||||||||| | ||||| ||||||||||||||    
T  31197011 tttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtacattcatggatcatgaattc 31196947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 31197332 - 31197296
Alignment:
Q  99 atggtatcaaagctcttttgagcactgctgcgcatcg 135  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  31197332 atggtatcagagctcttttgagctctgctgcgcatcg 31197296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 52770984 - 52771020
Alignment:
Q  99 atggtatcaaagctcttttgagcactgctgcgcatcg 135  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  52770984 atggtatcagagctcttttgagctctgctgcgcatcg 52771020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 241 - 475
Target Start/End: Complemental strand, 29155739 - 29155505
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||| | ||| |||||| |||||||||||| ||| | ||||| |||||  | ||||| ||||| |||||| | |||| |||||||||||||||| | |    
T  29155739 caaccttggaacatctattacgttcatgcttccgatggtccttcctccgtcaccattactccggtattgaataactccagttatcattcatgggcgcgtt 29155640  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | |||||||||||  | ||||  | |||||| |  ||||||||||| || | ||| || ||||| || || |||||||| ||||| ||||| || |||||    
T  29155639 caatgcgaagagccttaggaggaaagaataaattcgattttgttgatggatcaattccagttcctactgaatttgatcctagtttcaaggcgtgaaatcg 29155540  T
Q  441 gtgcaacatgcttattcattcgtggatcatgaatt 475  Q
     |||||||||||| | ||||| |||||||||||||    
T  29155539 ttgcaacatgcttgtgcattcttggatcatgaatt 29155505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 26129512 - 26129576
Alignment:
Q  412 tttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtggatcatgaattc 476  Q
    |||||||||||||| || || |||||||| || ||||||||| | ||||| ||||||||||||||    
T  26129512 tttgatccaagtttcaaagcatggaatcgttgtaacatgcttgtgcattcatggatcatgaattc 26129576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 26129191 - 26129227
Alignment:
Q  99 atggtatcaaagctcttttgagcactgctgcgcatcg 135  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  26129191 atggtatcagagctcttttgagctctgctgcgcatcg 26129227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 476
Target Start/End: Complemental strand, 97826 - 97591
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||||| ||||| |||| ||||||| |||||||| | ||||| |||||  || |||| ||||| |||||  | || || ||||| || |||||| | |    
T  97826 caacctggtaacgtgtattacgttcattcttctgatggtccttcctccgtcactgttactccggtattgaacaactcaaactatcactcttgggcgcgtt 97727  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | ||| |||||||  | ||||  | ||| |||| ||||||||| || || | ||| || ||||| |  || |||||||||||||| || || ||||||||    
T  97726 caatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcg 97627  T
Q  441 gtgcaacatgcttattcattcgtggatcatgaattc 476  Q
     |||||||||||| | ||||| ||||||||||||||    
T  97626 ttgcaacatgcttgtacattcatggatcatgaattc 97591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 97976 - 97940
Alignment:
Q  99 atggtatcaaagctcttttgagcactgctgcgcatcg 135  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  97976 atggtatcagagctcttttgagctctgctgcgcatcg 97940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 476
Target Start/End: Original strand, 13986091 - 13986326
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||||| ||||| |||| ||||||| |||||||| | ||||| |||||  || |||| ||||| |||||  | || || ||||| || |||||| | |    
T  13986091 caacctggtaacgtgtattacgttcattcttctgatggtccttcctccgtcactgttactccggtattgaacaactcaaactatcactcttgggcgcgtt 13986190  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | ||| |||||||  | ||||  | ||| |||| ||||||||| || || | ||| || ||||| |  || |||||||||||||| || || ||||||||    
T  13986191 caatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcg 13986290  T
Q  441 gtgcaacatgcttattcattcgtggatcatgaattc 476  Q
     |||||||||||| | ||||| ||||||||||||||    
T  13986291 ttgcaacatgcttgtacattcatggatcatgaattc 13986326  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 452
Target Start/End: Original strand, 18252030 - 18252241
Alignment:
Q  241 caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat 340  Q
    |||||||| || || |||| |||||||| ||||||| | || ||||||||  | |||||||||||  | | |||||| ||||  ||||| |||||| | |    
T  18252030 caacctggtaatgtgtattacgttcatgattctgatggtccctcttccgtcgccattacaccggttcttagtcattcaaatttccattcttgggcgcgtt 18252129  T
Q  341 cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttccaacagagtttgatccaagttttaaggcttggaatcg 440  Q
    | ||||||||||| |||||||  | ||| |||| ||||||||| || || |  || ||| ||||||| || |||||||||| ||| || |||||||||||    
T  18252130 ctatgcgaagagctcttggagggaagaacaagtttgattttgtggatggatctattcctattccaacggattttgatccaaatttcaaagcttggaatcg 18252229  T
Q  441 gtgcaacatgct 452  Q
     ||||| |||||    
T  18252230 ttgcaatatgct 18252241  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 472
Target Start/End: Complemental strand, 20245968 - 20245905
Alignment:
Q  409 gagtttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtggatcatga 472  Q
    |||||||||||| |||| |||||||||||||  |||||||||||||| ||||| ||||| ||||    
T  20245968 gagtttgatccatgtttcaaggcttggaatcattgcaacatgcttatgcattcttggattatga 20245905  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 20246277 - 20246231
Alignment:
Q  84 atgatgaacttcatgatggtatcaaagctcttttgagcactgctgcg 130  Q
    |||| ||||||||||||||||||||| ||||||||||| ||| ||||    
T  20246277 atgacgaacttcatgatggtatcaaatctcttttgagctctgatgcg 20246231  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 13985941 - 13985977
Alignment:
Q  99 atggtatcaaagctcttttgagcactgctgcgcatcg 135  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  13985941 atggtatcagagctcttttgagctctgctgcgcatcg 13985977  T

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Target: scaffold0013 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 476
Target Start/End: Complemental strand, 250772 - 250708
Alignment:
Q  412 tttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtggatcatgaattc 476  Q
    |||||||||||||| || || |||||||| |||||||||||| | ||||| ||||||||||||||    
T  250772 tttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtacattcatggatcatgaattc 250708  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 16254792 - 16254856
Alignment:
Q  412 tttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtggatcatgaattc 476  Q
    |||||||||||||| || || |||||||| || ||||||||| | ||||| ||||||||||||||    
T  16254792 tttgatccaagtttcaaagcatggaatcgttgtaacatgcttgtgcattcatggatcatgaattc 16254856  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 16254471 - 16254507
Alignment:
Q  99 atggtatcaaagctcttttgagcactgctgcgcatcg 135  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  16254471 atggtatcagagctcttttgagctctgctgcgcatcg 16254507  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 31187162 - 31187217
Alignment:
Q  411 gtttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtgga 466  Q
    ||||||||||||||| ||| |||||||||| ||||| |||||| |||||| |||||    
T  31187162 gtttgatccaagtttcaagtcttggaatcgctgcaatatgcttgttcatttgtgga 31187217  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 31195222 - 31195277
Alignment:
Q  411 gtttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtgga 466  Q
    ||||||||||||||| ||| |||||||||| ||||| |||||| |||||| |||||    
T  31195222 gtttgatccaagtttcaagtcttggaatcgctgcaatatgcttgttcatttgtgga 31195277  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 31213837 - 31213892
Alignment:
Q  411 gtttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtgga 466  Q
    ||||||||||||||| ||| |||||||||| ||||| |||||| |||||| |||||    
T  31213837 gtttgatccaagtttcaagtcttggaatcgctgcaatatgcttgttcatttgtgga 31213892  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 476
Target Start/End: Complemental strand, 20044706 - 20044630
Alignment:
Q  400 gttccaacagagtttgatccaagttttaaggcttggaatcggtgcaacatgcttattcattcgtggatcatgaattc 476  Q
    ||||| || ||||||||||| ||||| ||||| ||||| || ||||||||| | || || || ||||||||||||||    
T  20044706 gttcccacggagtttgatcctagtttcaaggcgtggaaccgttgcaacatgttaatccactcctggatcatgaattc 20044630  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 476
Target Start/End: Complemental strand, 13907 - 13861
Alignment:
Q  430 gcttggaatcggtgcaacatgcttattcattcgtggatcatgaattc 476  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||||    
T  13907 gcttggaatcggtgcaacatgctgattcactcatggatcttgaattc 13861  T

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Target: scaffold0061; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 476
Target Start/End: Complemental strand, 22965 - 22919
Alignment:
Q  430 gcttggaatcggtgcaacatgcttattcattcgtggatcatgaattc 476  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||||    
T  22965 gcttggaatcggtgcaacatgctgattcactcatggatcttgaattc 22919  T

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