View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18559_low_10 (Length: 467)

Name: NF18559_low_10
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18559_low_10
NF18559_low_10
[»] chr8 (5 HSPs)
chr8 (18-456)||(5717661-5718095)
chr8 (26-268)||(5684170-5684412)
chr8 (260-456)||(5685725-5685922)
chr8 (399-455)||(38290519-38290575)
chr8 (401-450)||(45247766-45247815)
[»] chr3 (3 HSPs)
chr3 (348-456)||(10973259-10973363)
chr3 (348-456)||(20933500-20933605)
chr3 (401-450)||(39187292-39187341)
[»] chr7 (3 HSPs)
chr7 (348-452)||(15464392-15464494)
chr7 (348-456)||(26373914-26374018)
chr7 (411-455)||(43989679-43989723)
[»] scaffold0169 (1 HSPs)
scaffold0169 (351-450)||(5052-5149)
[»] scaffold0074 (1 HSPs)
scaffold0074 (403-450)||(30821-30868)
[»] chr6 (5 HSPs)
chr6 (403-446)||(1601973-1602016)
chr6 (403-450)||(4852790-4852837)
chr6 (403-450)||(11554441-11554488)
chr6 (348-418)||(26592061-26592129)
chr6 (421-450)||(24397916-24397945)
[»] chr5 (4 HSPs)
chr5 (403-450)||(33009857-33009903)
chr5 (403-455)||(9012760-9012812)
chr5 (89-129)||(21033681-21033721)
chr5 (89-129)||(21034052-21034092)
[»] scaffold0377 (1 HSPs)
scaffold0377 (388-450)||(12609-12671)
[»] scaffold1804 (1 HSPs)
scaffold1804 (348-456)||(879-984)
[»] chr4 (2 HSPs)
chr4 (397-450)||(11560193-11560246)
chr4 (388-448)||(42756874-42756934)
[»] chr1 (3 HSPs)
chr1 (40-113)||(20203728-20203800)
chr1 (97-129)||(27067206-27067238)
chr1 (32-68)||(27796412-27796448)
[»] scaffold1345 (1 HSPs)
scaffold1345 (411-455)||(1845-1889)
[»] chr2 (2 HSPs)
chr2 (89-129)||(33534123-33534163)
chr2 (402-446)||(45275944-45275988)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 5717661 - 5718095
Alignment:
Q  18 ttaagtggctaaattgtctaatatttgtaatttaagaaaccaaaatgaaaagaaaacaagcttaaaggtctaaagtgaaacctaaaattaacttaaggga 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||  ||    
T  5717661 ttaagtgactaaattgtctaatatttgtaatttaagaaaccaaaaggaaaagaaaacaagctaaaagtt-taaagtgaaacctaaaattaacttaacaga 5717759  T
Q  118 ctaaaagtataactagtcatattttacagaggatgtgtttggatgatcaacatataaaatagacacattaaactcactaactaattttttaatacatgta 217  Q
    || ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||    
T  5717760 cttaaagtataattagtcatattttatagaggatgtgtttggatgatcaacatataaaatagatacattaaactcactaactatttttttaatatatgta 5717859  T
Q  218 aaaaatgtctcaaatacttatattaagcgacggatgtagtaattatttgaaataaagcattatttaagtttagtnnnnnnntattatttaagtatttctt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  5717860 aaaaatgtctcaaatacttatattaagcgacggatgtagtaattatttgaaataaagcattatttaagtttagtaaaaaaatattatttaagtatttctt 5717959  T
Q  318 ctatcaaaccgcgatcaacccacnnnnnnnaccatgttgtgcctctaaccttatttgactattttatcatatatcatagatatagagagtctcacactta 417  Q
    |||||||||||||||||||||||       ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5717960 ctatcaaaccgcgatcaacccac-ttttttaccatattgtgtctctgaccttatttgactattttatcatatatcatagatatagagagtctcacactta 5718058  T
Q  418 aatgagagatattaatgtgtcatgtgtgagttataattc 456  Q
    || |||| || |||||||||||  |||||||||||||||    
T  5718059 aaggagaaatgttaatgtgtca--tgtgagttataattc 5718095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 5684170 - 5684412
Alignment:
Q  26 ctaaattgtctaatatttgtaatttaagaaaccaaaatgaaaagaaaacaagcttaaaggtctaaagtgaaacctaaaattaacttaagggactaaaagt 125  Q
    |||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||||||||||| ||||||||||    
T  5684170 ctaatttgtctaatatttatagtttaagaaaccaaaatgaaaagaaaacaagcttaaaagtccaaaatgaaatctaaaattaacttaagagactaaaagt 5684269  T
Q  126 ataactagtcatattttacagaggatgtgtttggatgatcaacatataaaatagacacattaaactcactaactaattttttaatacatgtaaaaaatgt 225  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||| |||||||||||||    
T  5684270 ataactagtcatattctacaaaggatgtgtttggatgatcaacatataaaatagatacattaaactcgctcactatttttttaatatatgtaaaaaatgt 5684369  T
Q  226 ctcaaatacttatattaagcgacggatgtagtaattatttgaa 268  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  5684370 ctcaaatacttatattaagcgatggatgtagtaattatttgaa 5684412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 260 - 456
Target Start/End: Original strand, 5685725 - 5685922
Alignment:
Q  260 ttatttgaaataaagcattatttaagtttagtnnnnnnntattattt-aagtatttcttctatcaaaccgcgatcaacccacnnnnnnnaccatgttgtg 358  Q
    ||||||||||||||||||||||||||||| ||       |||||||| |||||| ||||||||||||||||||||||||||        ||||||| |||    
T  5685725 ttatttgaaataaagcattatttaagttttgtacaaaaatattattttaagtatatcttctatcaaaccgcgatcaacccattttttttaccatgtggtg 5685824  T
Q  359 cctctaaccttatttgactattttatcatatatcatagatatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgagttataattc 456  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  5685825 cctctgaccttatttgactattttttcatatatcatagacatagagaatctcacacttaaaggagagatgttaatgtgtcatgtgtgagttataattc 5685922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 455
Target Start/End: Original strand, 38290519 - 38290575
Alignment:
Q  399 atagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgagttataatt 455  Q
    ||||||||||||||| || ||  |||||| ||||||||||| |||||||||||||||    
T  38290519 atagagagtctcacaattgaaaaagagatgttaatgtgtcaagtgtgagttataatt 38290575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 45247766 - 45247815
Alignment:
Q  401 agagagtctcacacttaaatgagagatattaatgtgtcatgtgtgagtta 450  Q
    ||||||||||||||||||  ||||||| ||||| ||||| ||||||||||    
T  45247766 agagagtctcacacttaagggagagattttaatatgtcaagtgtgagtta 45247815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 10973363 - 10973259
Alignment:
Q  348 accatgttgtgcctctaaccttatttgactattttatcatatatcatagatatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgag 447  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||||| ||||||||||||||||||||  ||||||| |||||||||||| |||||     
T  10973363 accatgttgtgcctctgaccttatttgactattttatc--atatcatagacatagagagtctcacacttaa--gagagatgttaatgtgtcatttgtgaa 10973268  T
Q  448 ttataattc 456  Q
    |||||||||    
T  10973267 ttataattc 10973259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 20933605 - 20933500
Alignment:
Q  348 accatgttgtgcctctaaccttatttgactattttatcatatatcatagatatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgag 447  Q
    |||||||||||||| |   ||||||||||||||| ||| |||  |||||| ||||||||| ||||||||||  |||| || ||||||||||||||||| |    
T  20933605 accatgttgtgcctatggtcttatttgactatttgatcgtat--catagacatagagagtgtcacacttaag-gagaaatgttaatgtgtcatgtgtggg 20933509  T
Q  448 ttataattc 456  Q
    ||| |||||    
T  20933508 ttaaaattc 20933500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 39187292 - 39187341
Alignment:
Q  401 agagagtctcacacttaaatgagagatattaatgtgtcatgtgtgagtta 450  Q
    ||||||||||||||||||  ||||||| ||||| ||||| ||||||||||    
T  39187292 agagagtctcacacttaagggagagattttaatatgtcaagtgtgagtta 39187341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 452
Target Start/End: Complemental strand, 15464494 - 15464392
Alignment:
Q  348 accatgttgtgcctctaaccttatttgactattttatcatatatcatagatatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgag 447  Q
    |||||||| ||||||| ||  ||||||| |||||||||||||  |||||| ||||||||||||||||||||   ||||||  ||||||||||||||||||    
T  15464494 accatgttttgcctctgacaatatttgattattttatcatat--catagacatagagagtctcacacttaaggtagagatgctaatgtgtcatgtgtgag 15464397  T
Q  448 ttata 452  Q
    |||||    
T  15464396 ttata 15464392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 26374018 - 26373914
Alignment:
Q  348 accatgttgtgcctctaaccttatttgactattttatcatatatcatagatatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgag 447  Q
    |||||| |||| |||| ||||||||||||||| |  ||||||  |||||| ||||||  ||||||| ||||| |||| || |||||||||||||||||||    
T  26374018 accatgatgtgtctctgaccttatttgactatatcttcatat--catagacatagag--tctcacagttaaaagagaaatgttaatgtgtcatgtgtgag 26373923  T
Q  448 ttataattc 456  Q
    ||| |||||    
T  26373922 ttaaaattc 26373914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 43989679 - 43989723
Alignment:
Q  411 acacttaaatgagagatattaatgtgtcatgtgtgagttataatt 455  Q
    |||||||| |||||||| ||||||||||| |||||||||| ||||    
T  43989679 acacttaattgagagatgttaatgtgtcaagtgtgagttaaaatt 43989723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 450
Target Start/End: Original strand, 5052 - 5149
Alignment:
Q  351 atgttgtgcctctaaccttatttgactattttatcatatatcatagatatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgagtta 450  Q
    |||||| |||||| |||||||||||| |||| | ||||| |  |||||| ||||||||||||| ||||  |||||||   ||||||||||| ||||||||    
T  5052 atgttgggcctctgaccttatttgaccatttcaccatatct--tagatacagagagtctcacaattaagcgagagatgagaatgtgtcatgcgtgagtta 5149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Original strand, 30821 - 30868
Alignment:
Q  403 agagtctcacacttaaatgagagatattaatgtgtcatgtgtgagtta 450  Q
    |||||| || ||||||  ||||||||||||||||||||||||||||||    
T  30821 agagtcccatacttaagagagagatattaatgtgtcatgtgtgagtta 30868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 1601973 - 1602016
Alignment:
Q  403 agagtctcacacttaaatgagagatattaatgtgtcatgtgtga 446  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||    
T  1601973 agagtctcacagttaaaagagagatgttaatgtgtcatgtgtga 1602016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Original strand, 4852790 - 4852837
Alignment:
Q  403 agagtctcacacttaaatgagagatattaatgtgtcatgtgtgagtta 450  Q
    ||||||||| | ||||| ||||||| ||||||||||||||||||||||    
T  4852790 agagtctcaaagttaaaagagagatgttaatgtgtcatgtgtgagtta 4852837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 11554488 - 11554441
Alignment:
Q  403 agagtctcacacttaaatgagagatattaatgtgtcatgtgtgagtta 450  Q
    ||||||||| | ||||| ||||||| ||||||||||||||||||||||    
T  11554488 agagtctcaaagttaaaagagagatgttaatgtgtcatgtgtgagtta 11554441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 418
Target Start/End: Complemental strand, 26592129 - 26592061
Alignment:
Q  348 accatgttgtgcctctaaccttatttgactattttatcatatatcatagatatagagagtctcacacttaa 418  Q
    |||||||||||| ||| ||||||||| |||| |||||| |||  |||||| |||||||| |||||||||||    
T  26592129 accatgttgtgcatctgaccttatttaactactttatcttat--catagacatagagaggctcacacttaa 26592061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 450
Target Start/End: Original strand, 24397916 - 24397945
Alignment:
Q  421 gagagatattaatgtgtcatgtgtgagtta 450  Q
    ||||||||||||||||||||||||||||||    
T  24397916 gagagatattaatgtgtcatgtgtgagtta 24397945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 33009903 - 33009857
Alignment:
Q  403 agagtctcacacttaaatgagagatattaatgtgtcatgtgtgagtta 450  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||    
T  33009903 agagtctcacacttaaaa-agagatgttaatgtgtcatgtgtgagtta 33009857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 9012812 - 9012760
Alignment:
Q  403 agagtctcacacttaaatgagagatattaatgtgtcatgtgtgagttataatt 455  Q
    ||||||||||||||||  |||| |||||||||||||| |||| ||||| ||||    
T  9012812 agagtctcacacttaatggagacatattaatgtgtcaagtgttagttaaaatt 9012760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 21033721 - 21033681
Alignment:
Q  89 aaagtgaaacctaaaattaacttaagggactaaaagtataa 129  Q
    ||||||||||||||||||||||||||| || |||| |||||    
T  21033721 aaagtgaaacctaaaattaacttaaggaaccaaaaatataa 21033681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 21034092 - 21034052
Alignment:
Q  89 aaagtgaaacctaaaattaacttaagggactaaaagtataa 129  Q
    ||||||||||||||||||||||||||| || |||| |||||    
T  21034092 aaagtgaaacctaaaattaacttaaggaaccaaaaatataa 21034052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 450
Target Start/End: Complemental strand, 12671 - 12609
Alignment:
Q  388 atatcatagatatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgagtta 450  Q
    |||||||||||  | | ||||||||||||||   |||||| ||||||||||||||||||||||    
T  12671 atatcatagattcaaacagtctcacacttaaggaagagatgttaatgtgtcatgtgtgagtta 12609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1804 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1804
Description:

Target: scaffold1804; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 456
Target Start/End: Original strand, 879 - 984
Alignment:
Q  348 accatgttgtgcctctaaccttatttgactattttatcatatatcatagatatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgag 447  Q
    ||||||||||||||||   ||||||||||||||| |||   ||||||||| | | ||||| |||||||| || |||| || ||| ||||||||||||| |    
T  879 accatgttgtgcctctggtcttatttgactatttgatc--gtatcatagacaaaaagagtgtcacactt-aaggagaaatgttattgtgtcatgtgtggg 975  T
Q  448 ttataattc 456  Q
    ||| |||||    
T  976 ttaaaattc 984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 11560193 - 11560246
Alignment:
Q  397 atatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgagtta 450  Q
    ||||| |||||| |||||||||  ||||||| ||||||||||||| ||||||||    
T  11560193 atataaagagtcccacacttaagggagagatgttaatgtgtcatgggtgagtta 11560246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 42756934 - 42756874
Alignment:
Q  388 atatcatagatatagagagtctcacacttaaatgagagatattaatgtgtcatgtgtgagt 448  Q
    |||||||||| |  |||| ||||||||||||  ||||||| |||||||||||| |||||||    
T  42756934 atatcatagacacggagaatctcacacttaagggagagatgttaatgtgtcatttgtgagt 42756874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 20203800 - 20203728
Alignment:
Q  40 atttgtaatttaagaaaccaaaatgaaaagaaaacaagcttaaaggtctaaagtgaaacctaaaattaacttaa 113  Q
    ||||||||||||||  |||||||| ||| ||||| || ||||| ||  ||||| ||||||||||||||||||||    
T  20203800 atttgtaatttaagggaccaaaataaaatgaaaaaaa-cttaagggaataaagagaaacctaaaattaacttaa 20203728  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 27067206 - 27067238
Alignment:
Q  97 acctaaaattaacttaagggactaaaagtataa 129  Q
    |||||||||||| ||||||||||||||||||||    
T  27067206 acctaaaattaagttaagggactaaaagtataa 27067238  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 27796448 - 27796412
Alignment:
Q  32 tgtctaatatttgtaatttaagaaaccaaaatgaaaa 68  Q
    |||||||||||| |||||||||| |||||||||||||    
T  27796448 tgtctaatatttataatttaagagaccaaaatgaaaa 27796412  T

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Target: scaffold1345 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 1845 - 1889
Alignment:
Q  411 acacttaaatgagagatattaatgtgtcatgtgtgagttataatt 455  Q
    |||||||| |||||||| ||||||||||| |||||||||| ||||    
T  1845 acacttaattgagagatgttaatgtgtcaagtgtgagttaaaatt 1889  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 33534163 - 33534123
Alignment:
Q  89 aaagtgaaacctaaaattaacttaagggactaaaagtataa 129  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  33534163 aaagtgaaacctaaaattaacttgaaggactagaagtataa 33534123  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 45275944 - 45275988
Alignment:
Q  402 gagagtctcacacttaaatgagagatattaatgtgtcatgtgtga 446  Q
    ||||||||||||||||    |||||||||||||||||||||||||    
T  45275944 gagagtctcacacttaggcaagagatattaatgtgtcatgtgtga 45275988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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