View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_low_12 (Length: 445)
Name: NF18559_low_12
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 12141246 - 12140972
Alignment:
| Q |
10 |
agtagcataggaatgtttctgttatacgtttttgcaatgtgaaaagtctcatcttgaaaaaatcaagatgtatactatcattcagattaaaacttcaacc |
109 |
Q |
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| T |
12141246 |
agtagcaaaggaatgtttctgttatacgattttgcaatgtgaaaagtctcatcttgaaaaaatcaagatgtatactatcattcagactaaaacttcaacc |
12141147 |
T |
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| Q |
110 |
aaatcaaactcaaccatgataattgccaaattcaatttaaaatatgttacccaaaacattgtgaaaattaatgcctccattaagaacaaacacacatgac |
209 |
Q |
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| T |
12141146 |
aaatcaaactcaaccatgataattgccaaattcaatttaaaataagttacccaaaacatggtgaaaattaatgcctccattaagaacaaacacacatgac |
12141047 |
T |
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| Q |
210 |
attctgcgaaataagtgccaagaaaacgattctaaaggtatagatataatcatataagcactgttgagacctttt |
284 |
Q |
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| T |
12141046 |
attctgcgaaataagtgccaagaaaattattctaaatgtatagatataatcatataagcactgttgagacctttt |
12140972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 333 - 427
Target Start/End: Complemental strand, 12140923 - 12140829
Alignment:
| Q |
333 |
caatggcaacaggatggtttatctcttacccgctgcatcagttcccaactcagtaaagacagcagcatccttcctgcgcacagattcctcgtctt |
427 |
Q |
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| T |
12140923 |
caatggcaacaggatggtttatctcttacccgctgcatcagttcccaactcagtaaagacagcagcatccttcttgggcacagattcctcgtctt |
12140829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 12142290 - 12142231
Alignment:
| Q |
18 |
aggaatgtttctgttatacgtttttgcaatgtgaaaagtctcatcttgaaaaaatcaaga |
77 |
Q |
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| T |
12142290 |
aggaatgattctgtaataagttttttcaatgtgaaaagtctcatcttgaaaaaatcaaga |
12142231 |
T |
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