View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18559_low_14 (Length: 424)

Name: NF18559_low_14
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18559_low_14
NF18559_low_14
[»] chr7 (1 HSPs)
chr7 (18-414)||(7237348-7237744)
[»] scaffold0097 (1 HSPs)
scaffold0097 (17-94)||(21261-21335)
[»] chr8 (3 HSPs)
chr8 (17-94)||(22535809-22535883)
chr8 (17-94)||(22531124-22531198)
chr8 (17-94)||(25993733-25993804)
[»] chr6 (1 HSPs)
chr6 (17-94)||(33091366-33091440)
[»] chr5 (1 HSPs)
chr5 (17-94)||(13191555-13191629)
[»] chr3 (2 HSPs)
chr3 (17-94)||(20983458-20983532)
chr3 (17-94)||(49368203-49368277)
[»] chr2 (1 HSPs)
chr2 (17-94)||(20717424-20717498)


Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 7237744 - 7237348
Alignment:
Q  18 tactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttctatatgattatacctgcaagtatac 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||     
T  7237744 tactgactgctcatttcactttcatcttctctgtactgttgactgctcttccttcttcttctgtcttctcatttctaaatgattatacctgcaagtatat 7237645  T
Q  118 taatcccacgtataaattaatgtgggaagtagaggaaaataaaaattatcatgttcaagtgggataattctcagaacaaatattaaatgggtaattctca 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7237644 taaacccacgtataaattaatgtgggaagtagaggaaaataaaaattatcatgttcaagtgggataattctcagaacaaatattaaatgggtaattctca 7237545  T
Q  218 gagtttgaggactgagtacctcctaaagaatataggatgaaggaatagaattgatattttattcatgatactttcaaatgaatacatctgcttatatagt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7237544 gagtttgaggactgagtacctcctaaagaatataggatgaaggaatataattgatattttattcatgatactttcaaatgaatacatctgcttatatatt 7237445  T
Q  318 aatggaaataaaagaaatgttgcttaactaatttggccgcatcataaggatttattctatgctggcacaactgcataacaaactaaatctagtatta 414  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  7237444 aatggaaataaaagaaatgttgcttaactaaattggccgcatcataaggatttattctatgctggcaactctgcataacaaactaaatctagtatta 7237348  T

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Target: scaffold0097 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 21335 - 21261
Alignment:
Q  17 ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta 94  Q
    |||||||||||  |||||||||||||||||| ||||||| ||||||||||| ||||||||  ||||||||||||||||    
T  21335 ctactgactgc--atttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta 21261  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 22535883 - 22535809
Alignment:
Q  17 ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta 94  Q
    |||||||||||  |||||||||||||||||| ||||||| ||||||||||| ||||||||  ||||||||||||||||    
T  22535883 ctactgactgc--atttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta 22535809  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 22531198 - 22531124
Alignment:
Q  17 ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta 94  Q
    |||||||||||  |||||||||||||||||| ||||||| |||||||| || ||||||||  ||||||||||||||||    
T  22531198 ctactgactgc--atttcactttcatcttctttgtactgctgactgct-tttcttcttctcctgtcttctcatttcta 22531124  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 25993804 - 25993733
Alignment:
Q  17 ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta 94  Q
    |||||||||||  |||||||||||||||||| ||||||| ||||||||    ||||||||  ||||||||||||||||    
T  25993804 ctactgactgc--atttcactttcatcttctttgtactgctgactgct----cttcttctcctgtcttctcatttcta 25993733  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 33091366 - 33091440
Alignment:
Q  17 ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta 94  Q
    |||||||||||  |||||||||||||||||| ||||||| ||||||||||| ||||||||  ||||||||||||||||    
T  33091366 ctactgactgc--atttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta 33091440  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 13191629 - 13191555
Alignment:
Q  17 ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta 94  Q
    |||||||||||  |||||||||||||||||| ||||||| ||||||||||| ||||||||  ||||||||||||||||    
T  13191629 ctactgactgc--atttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta 13191555  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 20983458 - 20983532
Alignment:
Q  17 ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta 94  Q
    |||||||||||  |||||||||||||||||| ||||||| ||||||||||| ||||||||  ||||||||||||||||    
T  20983458 ctactgactgc--atttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta 20983532  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 49368277 - 49368203
Alignment:
Q  17 ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta 94  Q
    |||||||||||  |||||||||||||||||| ||||||| ||||||||||| ||||||||  ||||||||||||||||    
T  49368277 ctactgactgc--atttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta 49368203  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 20717498 - 20717424
Alignment:
Q  17 ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta 94  Q
    |||||||||||  |||||||||||||||||| ||||||  ||||||||||| ||||||||  ||||||||||||||||    
T  20717498 ctactgactgc--atttcactttcatcttctttgtactactgactgctctt-cttcttctcctgtcttctcatttcta 20717424  T

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