View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_low_15 (Length: 411)
Name: NF18559_low_15
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 21321307 - 21321686
Alignment:
| Q |
11 |
agaatatagtcaagttgataaaagtatactctatttgtttgtagtaatcatcatttaattatagtagaaaacagaatctcacaacgatgactcaagtatg |
110 |
Q |
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| T |
21321307 |
agaatatagtcaagttgataaaagtatactctatttgtt-gtagtaatcatcatttaattatagtagaaaacagaatctcacaacgatgactcaagtatg |
21321405 |
T |
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| Q |
111 |
aaaaaagtcatatcccatgtatcgtaggtgtgttttagcacttgtgattccaaataaaacttcacatgtgtttgtaggtatatatgttttaaattttg-t |
209 |
Q |
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| T |
21321406 |
aaaaaagtcatatcccatgtatcgtaggtgtgttttagcacttgtgattccaaataaaacttcacatgtgtttgtaggtatat--gttttcaattttgat |
21321503 |
T |
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| Q |
210 |
tcaagtaaaggtcccaagatcaattggtttgcaataaactctaaaacctaatcaactcctagaaacgttatataatggcatagaccttcatagtcccaca |
309 |
Q |
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| T |
21321504 |
tcaagtaaaggtcccaagatcaattggtttgcaataaactctaaaacctaatcaactcctagaaacgttatataatgacatagaccttcatagtcccaca |
21321603 |
T |
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| Q |
310 |
tcgtttaatcaaagagtttgtcactgtttatatgtggctagtgagaatatgaaaaacaccgggctttggtaacgcaagcctgt |
392 |
Q |
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| T |
21321604 |
tcgtttaattaaagagtttgtcgctgtttatatgtggctagtgagaatatgaaaaacaccgggctttggtaacgcaagcctgt |
21321686 |
T |
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