View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_low_16 (Length: 384)
Name: NF18559_low_16
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 25105687 - 25105498
Alignment:
| Q |
1 |
agacatttatacgctaaaagtatagtaatggacggattgccatgtctcaaattgaaagaaatgcacgtaacaacaaaatatgtaatnnnnnnnnnnnnnn |
100 |
Q |
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| T |
25105687 |
agacatttatacactaaaagtatagtaatggacggattggcatgtccaaaatggaaagaaatgcacgtagcaacaaaatatgtaataaaaaagaaaagaa |
25105588 |
T |
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| Q |
101 |
nnnntgaagatgcaaatcacaggtaaagcgtggaaattgtggcacccatttcattcttctcttttctctagcattgaggtgaaacttcca |
190 |
Q |
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| T |
25105587 |
aaaaggaagatgcaaatcacaggtaaagcgtggaaattgaggcacccatttcattcttctcttttctctagcattgaggtgaaacttcca |
25105498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 25105432 - 25105324
Alignment:
| Q |
258 |
atgatgattatcacagcattttgacaagtttcaatgcaatatggtttttaattgttgagaaagttagggtaatatatatggtgaaagtatgataatgtat |
357 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25105432 |
atgatgattatcatagcattttgacaagtttcaatgcaatatggtttttaattgttgagaaagttagggtaatatatattgtgaaagtatgataatgtat |
25105333 |
T |
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| Q |
358 |
gtctaaaat |
366 |
Q |
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||||||||| |
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| T |
25105332 |
gtctaaaat |
25105324 |
T |
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