View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_low_2 (Length: 912)
Name: NF18559_low_2
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_low_2 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 844; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 844; E-Value: 0
Query Start/End: Original strand, 8 - 894
Target Start/End: Original strand, 4021605 - 4022492
Alignment:
| Q |
8 |
cgaagaatatggttatggaggtgcattgcggaaaatggtactatttggttcgggttaataaagtataggtacagtccagtttcaggaaaattgctccgtc |
107 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4021605 |
cgaagaaaatggttatggaggtgcattgcggaaaatggtactatttggttcaggttaataaagtataggtacagtccagtttcaggaaaattgctccatc |
4021704 |
T |
|
| Q |
108 |
cagataccgtgtagtcgggaaggatagactcgttatggtggcgatatttatgttctattggaaaggcatgtgaagtcgaaccaaactggtttacaaatta |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4021705 |
cagataccgtgtagtcgggaaggatagactcgttatggtggcgatatttatgttctattggaaaggcatgtgaagtcgaaccaaactggtttacaaatta |
4021804 |
T |
|
| Q |
208 |
agttatgtgagtagtcggaaatggtgaaaagtgaaaacacattgttttggagagatctatggcttggggatcaacctttatgcgatcagttccctgttct |
307 |
Q |
| |
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||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4021805 |
agttaagtgagtagttggaaacggtgaaaagtgaaaacacattgttttggagagatctatggcttgggaatcaacctttatgcgatcagttccctgttct |
4021904 |
T |
|
| Q |
308 |
ctttaatttggcagatgatataccaaattatttaagttgtattggagtctcacacaggttgtcgggagattttaaggaaaaatccaagttcatttaacat |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4021905 |
ctttaatttggcagatgatataccaaattatttaagttgtattggagtctcacacaggttgtcgggagattttaaggaaaaatccatgttcatttaacat |
4022004 |
T |
|
| Q |
408 |
agtatttgagttgggttaaggatttaaattgtcagatttaagtgctatatatgaatactaacaattggtcaaggaaactctttggcagcaagtgaagctt |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022005 |
agtatttgagttgggttaaggatttaaattgtcagatttaagtgctatatatgaatactaacaattggtcaaggaaactctttggcagcaagtgaagctt |
4022104 |
T |
|
| Q |
508 |
ccccctaccgcaaaccaaccacatgttggtgtctccttcaaaaactgtacttatgaagaattcaacaaattttatttttgttatttaaatgaagttacac |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022105 |
ccccctaccgcaaaccaaccacatgttggtgtctccttcaaaaactgtacttatgaagaattcaacaaattttatttttgttatttaaatgaagttacac |
4022204 |
T |
|
| Q |
608 |
tttaatgtgttacaaagaaaaattaattatagaagttctcagttaaacagaaaaactagagataacctacaacttccaattacctctgaagtcattgtcc |
707 |
Q |
| |
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| T |
4022205 |
tttaatgtgttacaaagaaaaattaattatagaagttctcagttaaacagaaaaactagagataacctacaacttccaattacctctgaagtcattgtcc |
4022304 |
T |
|
| Q |
708 |
tatagcttcattttcaacctatatataaggctaaatcaagaaatatttgtttgttatcacaagataatttccatttacttgcatacaaagaacaatcagt |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022305 |
tatagcttcattttcaacctatatataaggctaaatcaagaaatatttgtttgttatcacaagataatttccatttacttgcatacaaagaacaatcagt |
4022404 |
T |
|
| Q |
808 |
gagatgagtttcatgcatttacttctgcagtctccttaagctatg-tttctttacctgcctcaagtatttgaaatgccacaaccaatg |
894 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022405 |
gagatgagtttcatacatttacttctgcagtctccttaagctatgttttctttacctgcctcaagtatttgaaatgccacaaccaatg |
4022492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 513 - 821
Target Start/End: Original strand, 4006759 - 4007069
Alignment:
| Q |
513 |
taccgcaaaccaaccacatgttggtgtctccttcaaaaactgtacttatgaagaattcaacaaattttatttttgttatttaaatgaagttacactttaa |
612 |
Q |
| |
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|||| ||||||||||||| || ||| |||||| ||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| | |
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| T |
4006759 |
taccacaaaccaaccacagatttgtgcctccttaaaaaaatctacttatgaagaattcaataaattttatttttgttaattaaatgaacttacactttca |
4006858 |
T |
|
| Q |
613 |
tgtgttacaaagaaaaattaattatagaagttctcagttaaacagaaaaactagagataacctacaacttccaattacctctgaagtcattgtcctatag |
712 |
Q |
| |
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||||||||||| |||| ||| ||||||||||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||| | |||||| || |
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| T |
4006859 |
tgtgttacaaataaaacc-aatcatagaagttctcagttaaacaagaaaaccagagataacctataactttcaattacctctgaagttctggtcctacag |
4006957 |
T |
|
| Q |
713 |
cttcattttcaacctatatataaggctaaatcaagaaatatttgtttgttat--cacaaga-taatttccatttacttgcatacaaagaacaatcagtga |
809 |
Q |
| |
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|||||||||||||||| || |||| |||||||||||||||| |||||||| ||||||| ||||||||||| | || |||| |||||| | ||||||| |
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| T |
4006958 |
cttcattttcaacctagctagaaggaaaaatcaagaaatatttttttgttataacacaagattaatttccattcagtttcatataaagaaaattcagtga |
4007057 |
T |
|
| Q |
810 |
gatgagtttcat |
821 |
Q |
| |
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|||||||||| |
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| T |
4007058 |
tctgagtttcat |
4007069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 786 - 870
Target Start/End: Complemental strand, 3947439 - 3947355
Alignment:
| Q |
786 |
ttgcatacaaagaacaatcagtgagatgagtttcatgcatttacttctgcagtctccttaagctatgtttctttacctgcctcaa |
870 |
Q |
| |
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||||||||||||||||| | ||||| |||||||||| ||| |||||| ||| ||||||||| ||||| |||||||||||||||| |
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| T |
3947439 |
ttgcatacaaagaacaaactgtgaggtgagtttcatacatgtacttcagcaatctccttaaactatgcatctttacctgcctcaa |
3947355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 567 - 644
Target Start/End: Original strand, 3807361 - 3807446
Alignment:
| Q |
567 |
attcaacaaattttatttttgttatttaaatgaagttaca--------ctttaatgtgttacaaagaaaaattaattatagaagtt |
644 |
Q |
| |
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||||||||||| ||| |||||||||||||||||| ||||| |||| ||||||||||||||||||| |||| |||||||| |
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| T |
3807361 |
attcaacaaatcttagttttgttatttaaatgaaattacacttttaatcttttatgtgttacaaagaaaaatcaattttagaagtt |
3807446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 567 - 644
Target Start/End: Original strand, 3814805 - 3814890
Alignment:
| Q |
567 |
attcaacaaattttatttttgttatttaaatgaagttaca--------ctttaatgtgttacaaagaaaaattaattatagaagtt |
644 |
Q |
| |
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||||||||||| ||| |||||||||||||||||| ||||| |||| ||||||||||||||||||| |||| |||||||| |
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| T |
3814805 |
attcaacaaatcttagttttgttatttaaatgaaattacacttttaatcttttatgtgttacaaagaaaaatcaattttagaagtt |
3814890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 692
Target Start/End: Complemental strand, 3958635 - 3958508
Alignment:
| Q |
569 |
tcaacaaattttatttttgttatttaaatgaagttacactttaatgtgttacaaagaaaaatt----aattatagaagttctcagttaaacagaaaaact |
664 |
Q |
| |
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||||||||| | |||||||||| ||| || ||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||| | ||| | |
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| T |
3958635 |
tcaacaaatctaatttttgttacttagcataacttagactttcatgtgttacaaagaaaaattaatcaattatagcagttctcatttaaagaagaaagtt |
3958536 |
T |
|
| Q |
665 |
agagataacctacaacttccaattacct |
692 |
Q |
| |
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| T |
3958535 |
aaagataacctacaacttacgattacct |
3958508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 5113 - 5190
Alignment:
| Q |
122 |
tcgggaaggatagactcgttatggtggcgatatttatgttctattggaaaggcatgtgaagtcgaaccaaactggttt |
199 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||||||| || ||||||| |||||||| ||||||||||||||| |
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| T |
5113 |
tcgggaaggttagactcgttatggtggcgtgatttatgttcaataggaaaggtgtgtgaagtggaaccaaactggttt |
5190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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