View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_low_20 (Length: 266)
Name: NF18559_low_20
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 45 - 256
Target Start/End: Complemental strand, 39125973 - 39125762
Alignment:
| Q |
45 |
tccgtatcaaccttgagcaacaatccaaatgtgaaggacaacagctcacagccgcagaaagctaactaaatcgtagatcatgcctttcttattgatgtat |
144 |
Q |
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| T |
39125973 |
tccgtatcaaccttgagcaacaatccaaatgtgaaggacaacagctcacagccgcagaaagctaactaaatcgtagatcatgcctttcttattgatgtat |
39125874 |
T |
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| Q |
145 |
atcgacgtcaagagcatatgaaaattatgtatgaataatcaagcatgagatggcatcatataagtaaattgtagatgtagagtttgtcatctgaaaggtt |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39125873 |
atcgacgtcaagagcatatgaaaattatgtatgaataatcaagcatgagatggtatcatataagtaaattgtagatgtagagtttgtcatctgaaaggtt |
39125774 |
T |
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| Q |
245 |
ccacaggttctg |
256 |
Q |
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|||| ||||||| |
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| T |
39125773 |
ccactggttctg |
39125762 |
T |
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