View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_low_21 (Length: 265)
Name: NF18559_low_21
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 64 - 259
Target Start/End: Complemental strand, 32903472 - 32903277
Alignment:
| Q |
64 |
tacccgaaagtccccatcactcgagtagaaacatgactattgagatcagaagcagtctttgcaagaccaaaatctgcaacctgtcaacagaaatttgata |
163 |
Q |
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| T |
32903472 |
tacccgaaagtccccatcactcgagtagaaacatgagtgttgagatcagaagcaatctttgcaagaccaaaatcagcaacctgtcaacagaaatttgata |
32903373 |
T |
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| Q |
164 |
ctaaattaaactaaaattcacaacttcttagaactttttaaacagtgcatcgtcactaccacaaggaagacgtgtaataaaatatacctttgcttc |
259 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||| |||||| | ||||| || ||||||||||||| |
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| T |
32903372 |
ctaaattaaactaaaattcacaacttattagaacattttaaacagtgcatcaccactatcacagggaagatgcgtaatggaacatacctttgcttc |
32903277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 259
Target Start/End: Complemental strand, 32870170 - 32869972
Alignment:
| Q |
64 |
tacccgaaagtccccatcactcgagtagaaacatgactattgagatcagaagcagtctttgcaagaccaaaatctgcaacctgtcaacagaaatttgata |
163 |
Q |
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||||||||||||||| ||||| |||||||||| ||| | || ||||| | | |||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
32870170 |
tacccgaaagtccccttcacttgagtagaaacgtgagtgctggaatcaggtgaatcctttgcaagaccaaaatcagcaacctttcaacagaaattcgata |
32870071 |
T |
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| Q |
164 |
ctaaattaaactaaaattcacaacttc----ttagaactttttaaacagtgcatcgtcactaccacaaggaagacgtgtaataaaatatacctttgcttc |
259 |
Q |
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|||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||| |||||| ||||| ||||||| || ||||||||||||| |
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| T |
32870070 |
ctaaattaaactaatattcacaacttaattattagaacattttaaacagtgcatcaccactgccacaa-gaagatgtgtaatggaacatacctttgcttc |
32869972 |
T |
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