View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_low_22 (Length: 263)
Name: NF18559_low_22
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 2162217 - 2162002
Alignment:
| Q |
21 |
agctgatggtgaattgaatgagactgtcgtgactgccttgatcatcatttttgttatatctattcagctatgtatagtctatcttgtgagctttcgccct |
120 |
Q |
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| T |
2162217 |
agctgatggtgaattgaatgagactgtcgtgactgccttgatcatcagttttgttatatctattcagctatgtatagtctatcttgcgagctttcgccct |
2162118 |
T |
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| Q |
121 |
agtaacagcagcatctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagtgattcttgtttcgaagactgctactatcgtta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2162117 |
agtaacagcagcatctttgggatcttattcatacttcttctatcaagtgcaatatcatttatagaagtgattcttgtttcgacgactgctactatcgtta |
2162018 |
T |
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| Q |
221 |
tttcgatcacttggtt |
236 |
Q |
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|||||||||||||||| |
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| T |
2162017 |
tttcgatcacttggtt |
2162002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 2164327 - 2164215
Alignment:
| Q |
124 |
aacagcagcatctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagtgattcttgtttcgaagactgctactatcgttattt |
223 |
Q |
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|||| ||||||||||||| ||||||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
2164327 |
aacaacagcatctttggggtcttattcataattctgctatcaactgcaatatcaattacagaagtgattcttgtttcgaagaccgctactatcgttattt |
2164228 |
T |
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| Q |
224 |
cgatcacttggtt |
236 |
Q |
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||||||||||||| |
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| T |
2164227 |
cgatcacttggtt |
2164215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 2181693 - 2181621
Alignment:
| Q |
129 |
cagcatctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagtgattcttgtttcg |
201 |
Q |
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||||||||||| ||| |||||||| |||| ||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
2181693 |
cagcatctttgatatcatattcataattctgctatcaactgcaatatcgtttatagaagtgagtcttgtttcg |
2181621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 1455911 - 1455856
Alignment:
| Q |
133 |
atctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagt |
188 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||| | |||||||| |
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| T |
1455911 |
atctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagt |
1455856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 1567434 - 1567489
Alignment:
| Q |
133 |
atctttgggatcttattcatacttctcctatcaactgcaatatcatttatagaagt |
188 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||| | |||||||| |
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| T |
1567434 |
atctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagt |
1567489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 2159572 - 2159516
Alignment:
| Q |
124 |
aacagcagcatctttgggatcttattcatacttctcctatcaactgcaatatcattt |
180 |
Q |
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||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||| |
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| T |
2159572 |
aacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcattt |
2159516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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