View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18559_low_3 (Length: 619)

Name: NF18559_low_3
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18559_low_3
NF18559_low_3
[»] chr5 (20 HSPs)
chr5 (11-601)||(8820218-8820813)
chr5 (520-586)||(7853609-7853675)
chr5 (501-571)||(35135730-35135799)
chr5 (520-571)||(14295457-14295508)
chr5 (501-571)||(29588813-29588881)
chr5 (522-571)||(12595808-12595857)
chr5 (501-545)||(7096221-7096264)
chr5 (501-545)||(13224362-13224405)
chr5 (520-572)||(29116997-29117049)
chr5 (501-568)||(9202819-9202885)
chr5 (520-562)||(10303752-10303794)
chr5 (520-562)||(10363701-10363743)
chr5 (520-566)||(28586839-28586885)
chr5 (520-570)||(39823190-39823240)
chr5 (522-571)||(32969185-32969234)
chr5 (520-572)||(985584-985636)
chr5 (501-545)||(20982229-20982272)
chr5 (501-545)||(26516231-26516274)
chr5 (503-555)||(39128574-39128625)
chr5 (501-545)||(40048374-40048417)
[»] chr3 (23 HSPs)
chr3 (520-576)||(49586979-49587035)
chr3 (500-571)||(1395603-1395673)
chr3 (501-571)||(36783402-36783472)
chr3 (520-567)||(10101548-10101595)
chr3 (520-567)||(10212473-10212520)
chr3 (520-566)||(15304420-15304466)
chr3 (520-569)||(42809252-42809301)
chr3 (520-567)||(10357384-10357431)
chr3 (520-571)||(22214749-22214800)
chr3 (522-569)||(42808932-42808979)
chr3 (501-571)||(20192674-20192743)
chr3 (519-565)||(26990684-26990730)
chr3 (520-554)||(33882979-33883013)
chr3 (501-571)||(41028919-41028988)
chr3 (501-563)||(44374720-44374781)
chr3 (501-567)||(53736185-53736250)
chr3 (520-569)||(905040-905089)
chr3 (507-555)||(2128335-2128382)
chr3 (501-545)||(16790182-16790225)
chr3 (501-545)||(20173982-20174025)
chr3 (501-569)||(27792805-27792872)
chr3 (507-571)||(32703077-32703140)
chr3 (501-545)||(49546581-49546624)
[»] chr6 (22 HSPs)
chr6 (504-571)||(29274297-29274363)
chr6 (502-584)||(507154-507235)
chr6 (501-571)||(4006647-4006716)
chr6 (507-571)||(24836267-24836330)
chr6 (520-571)||(281916-281967)
chr6 (520-571)||(1402947-1402998)
chr6 (520-571)||(9093624-9093675)
chr6 (520-571)||(22742317-22742368)
chr6 (501-571)||(5550065-5550134)
chr6 (527-569)||(7713983-7714025)
chr6 (501-571)||(11340693-11340762)
chr6 (501-571)||(21959661-21959730)
chr6 (501-567)||(32386635-32386700)
chr6 (501-542)||(4247731-4247771)
chr6 (526-567)||(9582670-9582711)
chr6 (502-571)||(10452428-10452496)
chr6 (501-542)||(31461611-31461651)
chr6 (504-545)||(33068655-33068695)
chr6 (501-545)||(2514635-2514678)
chr6 (501-569)||(20671935-20672002)
chr6 (501-569)||(29940729-29940796)
chr6 (500-544)||(33416317-33416360)
[»] chr4 (23 HSPs)
chr4 (520-571)||(30024651-30024702)
chr4 (520-571)||(4071833-4071884)
chr4 (506-571)||(6364087-6364151)
chr4 (504-585)||(25487599-25487679)
chr4 (503-571)||(30338660-30338727)
chr4 (507-571)||(51098254-51098317)
chr4 (520-571)||(47119033-47119084)
chr4 (520-571)||(49219090-49219141)
chr4 (520-567)||(52735073-52735120)
chr4 (520-571)||(54325105-54325156)
chr4 (501-571)||(8130107-8130176)
chr4 (501-543)||(47970251-47970292)
chr4 (501-542)||(4191672-4191712)
chr4 (520-569)||(22684586-22684635)
chr4 (520-569)||(41701511-41701560)
chr4 (522-563)||(52294042-52294083)
chr4 (522-571)||(53626729-53626778)
chr4 (501-545)||(4798653-4798696)
chr4 (520-572)||(17884019-17884071)
chr4 (501-545)||(28623222-28623265)
chr4 (520-572)||(44007939-44007991)
chr4 (501-545)||(51044553-51044596)
chr4 (522-570)||(54327518-54327566)
[»] scaffold0024 (1 HSPs)
scaffold0024 (501-571)||(27509-27578)
[»] chr8 (17 HSPs)
chr8 (501-571)||(1112786-1112855)
chr8 (520-571)||(1470924-1470975)
chr8 (501-571)||(42597334-42597403)
chr8 (526-571)||(42237490-42237535)
chr8 (520-571)||(35374441-35374492)
chr8 (521-571)||(3537099-3537149)
chr8 (501-571)||(4558731-4558800)
chr8 (501-567)||(13652148-13652213)
chr8 (501-567)||(13710791-13710856)
chr8 (501-555)||(14482135-14482188)
chr8 (526-567)||(7026688-7026729)
chr8 (520-573)||(14280467-14280520)
chr8 (501-545)||(10114423-10114466)
chr8 (505-545)||(11119093-11119132)
chr8 (501-545)||(11188249-11188292)
chr8 (505-545)||(26215433-26215472)
chr8 (505-569)||(37444485-37444548)
[»] chr2 (18 HSPs)
chr2 (501-571)||(11344352-11344421)
chr2 (501-567)||(3673740-3673805)
chr2 (501-571)||(10143105-10143174)
chr2 (501-571)||(18962106-18962175)
chr2 (501-570)||(28803575-28803643)
chr2 (506-571)||(31740027-31740092)
chr2 (501-545)||(34054995-34055038)
chr2 (501-571)||(2416246-2416315)
chr2 (501-563)||(10150688-10150749)
chr2 (529-571)||(11513858-11513900)
chr2 (520-570)||(17952770-17952820)
chr2 (501-571)||(25609729-25609798)
chr2 (501-567)||(37053527-37053592)
chr2 (517-555)||(39567851-39567889)
chr2 (504-545)||(5133708-5133748)
chr2 (520-565)||(40837502-40837547)
chr2 (501-542)||(41033047-41033087)
chr2 (520-552)||(1939419-1939451)
[»] chr1 (30 HSPs)
chr1 (501-571)||(45999356-45999425)
chr1 (520-571)||(15360845-15360896)
chr1 (520-571)||(31517808-31517859)
chr1 (520-571)||(49517021-49517072)
chr1 (522-571)||(27738248-27738297)
chr1 (522-571)||(44032067-44032116)
chr1 (521-576)||(1879090-1879145)
chr1 (520-571)||(4200180-4200231)
chr1 (520-571)||(9572176-9572227)
chr1 (520-563)||(14737781-14737824)
chr1 (501-568)||(17269183-17269249)
chr1 (520-571)||(18434546-18434597)
chr1 (520-571)||(26630414-26630465)
chr1 (520-571)||(30259555-30259606)
chr1 (504-571)||(34619446-34619512)
chr1 (520-571)||(39777614-39777665)
chr1 (520-571)||(45990126-45990177)
chr1 (520-570)||(15687142-15687192)
chr1 (517-571)||(25479529-25479583)
chr1 (520-569)||(27140436-27140485)
chr1 (526-571)||(30371105-30371150)
chr1 (501-589)||(38651461-38651546)
chr1 (506-563)||(50319230-50319286)
chr1 (505-545)||(6976885-6976924)
chr1 (501-541)||(13037797-13037836)
chr1 (517-545)||(25707108-25707136)
chr1 (526-570)||(28467376-28467420)
chr1 (501-541)||(29046011-29046050)
chr1 (507-567)||(36151577-36151636)
chr1 (501-569)||(46499924-46499991)
[»] chr7 (24 HSPs)
chr7 (501-569)||(33894556-33894622)
chr7 (506-569)||(27121656-27121718)
chr7 (520-567)||(39591539-39591586)
chr7 (520-571)||(48157188-48157239)
chr7 (501-571)||(28165024-28165093)
chr7 (505-567)||(35536044-35536105)
chr7 (520-568)||(1417215-1417263)
chr7 (520-572)||(31908377-31908429)
chr7 (520-571)||(12835005-12835056)
chr7 (524-571)||(23918912-23918959)
chr7 (520-567)||(30456522-30456569)
chr7 (520-571)||(40689054-40689105)
chr7 (520-570)||(22759137-22759187)
chr7 (498-544)||(35808999-35809044)
chr7 (520-585)||(42656466-42656531)
chr7 (520-569)||(43318598-43318647)
chr7 (523-568)||(46825052-46825097)
chr7 (520-569)||(47046178-47046227)
chr7 (501-545)||(5373158-5373201)
chr7 (501-545)||(24973877-24973920)
chr7 (504-572)||(31341130-31341197)
chr7 (520-571)||(43152969-43153021)
chr7 (503-571)||(45813248-45813315)
chr7 (507-571)||(49060479-49060542)
[»] scaffold0590 (1 HSPs)
scaffold0590 (501-545)||(1168-1211)
[»] scaffold0275 (1 HSPs)
scaffold0275 (501-545)||(2764-2807)
[»] scaffold0549 (2 HSPs)
scaffold0549 (501-571)||(1792-1861)
scaffold0549 (501-571)||(3882-3951)


Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 11 - 601
Target Start/End: Original strand, 8820218 - 8820813
Alignment:
Q  11 cagagatatcaaatgccaagagataaacagctactgtaactgcaatcaagttaaacacattgaagaactgcgtctctttattttcttctgtggaagttga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820218 cagagatatcaaatgccaagagataaacagctactgtaactgcaatcaagttaaacacattgaagaactgcgtctctttattttcttctgtggaagttga 8820317  T
Q  111 agctggtggagtttcatgaaggaaaatagcagcaatgagacaaatgatggcaggaacaattgtgagcattaatagaaacttcgatgggtctgaggaaaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820318 agctggtggagtttcatgaaggaaaatagcagcaatgagacaaatgatggcaggaacaattgtgagcattaatagaaacttcgatgggtctgaggaaaat 8820417  T
Q  211 aaagctgtgcatatgtcagtgaagattgctgtgctgagtcctacataaccctttagaatgccggaaattggaccacggttttttggaaagtttctcatgc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8820418 aaagctgtgcatatgtcagtgaagattgctgtgctgagtcctacataaccctttagaatgccggaaattggaccacgattttttggaaagtttctcatgc 8820517  T
Q  311 aagttacaagtactgctgtgttcatccatgtgctgctgtttccacccatacacaagaatatacacatctgcaaaatagttccaaagtaataaaataaatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820518 aagttacaagtactgctgtgttcatccatgtgctgctgtttccacccatacacaagaatatacacatctgcaaaatagttccaaagtaataaaataaatt 8820617  T
Q  411 ggttttttccttcttgaaatgttgtattcatccaacaccctgtctaa-----atatactacttaattaaacatttctataacaaaagatattataaagtg 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820618 ggttttttccttcttgaaatgttgtattcatccaacaccctgtctaaatattatatactacttaattaaacatttctataacaaaagatattataaagtg 8820717  T
Q  506 cttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctatcttggggaacttataaaataaactgaatac 601  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  8820718 cttatgtatagagatatttctataacaaaagataaaattacgtgaaattgctttcatataagctatcttggagaacttataaaataaattgaatac 8820813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 520 - 586
Target Start/End: Original strand, 7853609 - 7853675
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctatcttggggaacttata 586  Q
    |||||||||||||||||||||||||| || |||||| || | ||| ||||||||||| |||||||||    
T  7853609 tatttctataacaaaagataaaataaagttaaattgtttccgtattagctatcttggagaacttata 7853675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 35135799 - 35135730
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||| || ||| |  |||||||||||||||    
T  35135799 aagtgtttatgtata-agatatttctataacaaaagataaaataaagtcaaactattttcatataagctat 35135730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 14295457 - 14295508
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||||||||| || ||| || |||||||||||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 14295508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 29588813 - 29588881
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| || |||||||||||||||| ||||||||| |  |||||| |||||||||||||||    
T  29588813 aagtgcttatgtata-agctatttctataacaaaatataaaataatg-aaaattgttttcatataagctat 29588881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 571
Target Start/End: Complemental strand, 12595857 - 12595808
Alignment:
Q  522 tttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||||||| || |||||| |||||||||| ||||    
T  12595857 tttctataacaaaagataaaataaagttaaattgttttcatataaactat 12595808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 7096264 - 7096221
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  7096264 aagtgcttatgtata-agctatttctataacaaaagataaaataa 7096221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 13224362 - 13224405
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  13224362 aagtgcttatgtata-agctatttctataacaaaagataaaataa 13224405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 29117049 - 29116997
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctatc 572  Q
    |||||||||||||||||||||||||| || ||| || |||| |||||||||||    
T  29117049 tatttctataacaaaagataaaataaagtcaaactgttttcgtataagctatc 29116997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 568
Target Start/End: Complemental strand, 9202885 - 9202819
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagc 568  Q
    |||||||||| |||| || ||||||| || ||||||||||||||| || |||||| ||||||||||||    
T  9202885 aagtgcttatatata-agctatttctgtagcaaaagataaaataaagttaaattgttttcatataagc 9202819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 562
Target Start/End: Original strand, 10303752 - 10303794
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcat 562  Q
    |||||||||||||||||||||||||| || |||||| ||||||    
T  10303752 tatttctataacaaaagataaaataaagtcaaattgttttcat 10303794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 562
Target Start/End: Original strand, 10363701 - 10363743
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcat 562  Q
    |||||||||||||||||||||||||| || |||||| ||||||    
T  10363701 tatttctataacaaaagataaaataaagttaaattgttttcat 10363743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 566
Target Start/End: Complemental strand, 28586885 - 28586839
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataa 566  Q
    |||||||||||||||||||||||||| || ||| || ||||||||||    
T  28586885 tatttctataacaaaagataaaataaagtcaaactgttttcatataa 28586839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 570
Target Start/End: Complemental strand, 39823240 - 39823190
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagcta 570  Q
    ||||| |||||||||||||||||||| || ||| | |||||||||||||||    
T  39823240 tatttatataacaaaagataaaataaagtcaaactactttcatataagcta 39823190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 571
Target Start/End: Complemental strand, 32969234 - 32969185
Alignment:
Q  522 tttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||||||| || |||||  ||| |||||||||||    
T  32969234 tttctataacaaaagataaaataaagtcaaattatttttatataagctat 32969185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 985584 - 985636
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctatc 572  Q
    |||||| ||||||||||||||||||| || ||| || ||||| ||||||||||    
T  985584 tatttccataacaaaagataaaataaagtcaaactgttttcacataagctatc 985636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 20982272 - 20982229
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||    
T  20982272 aagtgcttatgtata-agctatttctataacaaaggataaaataa 20982229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 26516231 - 26516274
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || |||||||| |||||||||||||||||    
T  26516231 aagtgcttatgtata-agctatttctaaaacaaaagataaaataa 26516274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 555
Target Start/End: Original strand, 39128574 - 39128625
Alignment:
Q  503 gtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattg 555  Q
    ||||||||||||| || || ||||||||||||||||||||||| || ||||||    
T  39128574 gtgcttatgtata-agctaattctataacaaaagataaaataaagtcaaattg 39128625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 40048417 - 40048374
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || | ||||||||||||||||||||||||    
T  40048417 aagtgcttatgtata-agttgtttctataacaaaagataaaataa 40048374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 576
Target Start/End: Complemental strand, 49587035 - 49586979
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctatcttgg 576  Q
    |||||||||||||||||||||||||| || ||| || ||||||||||||||||||||    
T  49587035 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctatcttgg 49586979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 500 - 571
Target Start/End: Original strand, 1395603 - 1395673
Alignment:
Q  500 aaagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||| |||||||| || |||||||||||||||||||||||||| || |||||  |||||||||||||||    
T  1395603 aaagtgcatatgtata-agctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 36783472 - 36783402
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||| ||||||||| || |||||||||| ||||||||||||||| || |||||| |||||||||| ||||    
T  36783472 aagtgtttatgtataaagctatttctataccaaaagataaaataaagtaaaattgttttcatataaactat 36783402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 567
Target Start/End: Complemental strand, 10101595 - 10101548
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||    
T  10101595 tatttctataacaaaagataaaataaagttaaattgttttcatataag 10101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 567
Target Start/End: Complemental strand, 10212520 - 10212473
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||    
T  10212520 tatttctataacaaaagataaaataaagttaaattgttttcatataag 10212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 566
Target Start/End: Complemental strand, 15304466 - 15304420
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataa 566  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||    
T  15304466 tatttctataacaaaagataaaataaagttaaattgttttcatataa 15304420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 42809252 - 42809301
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    |||||||||||||||||||||||||  || |||||| |||||||||||||    
T  42809252 tatttctataacaaaagataaaatatagttaaattgttttcatataagct 42809301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 567
Target Start/End: Original strand, 10357384 - 10357431
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    |||||||||||||||||||||||||| || |||||  |||||||||||    
T  10357384 tatttctataacaaaagataaaataatgttaaatttttttcatataag 10357431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 22214800 - 22214749
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| |||||||||| |||||||||  ||||||||| ||||    
T  22214800 tatttctataacaaaggataaaataaagtgaaattgtattcatataacctat 22214749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 569
Target Start/End: Original strand, 42808932 - 42808979
Alignment:
Q  522 tttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    |||||||||||||||||||||||| || |||||| ||| |||||||||    
T  42808932 tttctataacaaaagataaaataaagttaaattgtttttatataagct 42808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 20192743 - 20192674
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| || ||||| |||||||||||||||||||| || |||  | |||||||||| ||||    
T  20192743 aagtgcttatgtata-agctatttatataacaaaagataaaataaagtcaaacagttttcatataatctat 20192674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 565
Target Start/End: Original strand, 26990684 - 26990730
Alignment:
Q  519 atatttctataacaaaagataaaataacgtgaaattgctttcatata 565  Q
    ||||||||||||||||||||||||||| || |||||  |||||||||    
T  26990684 atatttctataacaaaagataaaataaagtcaaattcttttcatata 26990730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 554
Target Start/End: Original strand, 33882979 - 33883013
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaatt 554  Q
    |||||||||||||||||||||||||| ||||||||    
T  33882979 tatttctataacaaaagataaaataaagtgaaatt 33883013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 41028988 - 41028919
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| || |||||||||||||||||| ||||||| || ||  || ||||| |||||||||    
T  41028988 aagtgcttatgtata-agctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagctat 41028919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 44374781 - 44374720
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcata 563  Q
    ||||||||||||||| || ||| ||| |||||||||||||||||| || |||||| |||||||    
T  44374781 aagtgcttatgtata-agctatatctttaacaaaagataaaataaagtcaaattgttttcata 44374720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 567
Target Start/End: Complemental strand, 53736250 - 53736185
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    ||||||||| |||| ||| |||||||||||||||||||||||||| || ||| |  |||||||||||    
T  53736250 aagtgcttacgtat-gagttatttctataacaaaagataaaataatgtcaaactattttcatataag 53736185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 905089 - 905040
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    |||||||||||||||||||||||||| || || ||| || ||||||||||    
T  905089 tatttctataacaaaagataaaataaagtcaatttgtttgcatataagct 905040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 2128382 - 2128335
Alignment:
Q  507 ttatgtatagagatatttctataacaaaagataaaataacgtgaaattg 555  Q
    ||||||||| || |||||||||||||||||||||||||| || ||||||    
T  2128382 ttatgtata-agctatttctataacaaaagataaaataaagttaaattg 2128335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 16790225 - 16790182
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    |||||||||| |||| || ||||||||||||||||||||||||||    
T  16790225 aagtgcttatatata-agttatttctataacaaaagataaaataa 16790182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 20174025 - 20173982
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||  || ||||||||||||||||||||||||||    
T  20174025 aagtgcttatgtatt-agttatttctataacaaaagataaaataa 20173982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 27792805 - 27792872
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||||||||||||| || |||||| | ||||||||||||||||| || ||| |  |||||||||||||    
T  27792805 aagtgcttatgtata-agctatttcaaaaacaaaagataaaataaggtcaaactattttcatataagct 27792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 32703077 - 32703140
Alignment:
Q  507 ttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||| || ||||||||| | ||||||||||||||  | |||||| |||||||||||||||    
T  32703077 ttatgtata-agctatttctattataaaagataaaataaactcaaattgttttcatataagctat 32703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 49546624 - 49546581
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    |||||||||||| || |||||||| ||||||||||||||||||||    
T  49546624 aagtgcttatgtgta-agatatttttataacaaaagataaaataa 49546581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 571
Target Start/End: Complemental strand, 29274363 - 29274297
Alignment:
Q  504 tgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||| || |||||||||| ||||||||||||||| || |||||| |||||||||||||||    
T  29274363 tgcttatgtata-agctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctat 29274297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 584
Target Start/End: Original strand, 507154 - 507235
Alignment:
Q  502 agtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctatcttggggaactta 584  Q
    |||||||||||||| |  |||||||||||||||||||||||||| || | |||| |||  ||||||||||||||| |||||||    
T  507154 agtgcttatgtataaat-tatttctataacaaaagataaaataaagttagattgtttttgtataagctatcttggagaactta 507235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 4006647 - 4006716
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||| || |||||| ||| |||||||||||    
T  4006647 aagtgcttatgcata-agatatttctataacaaatgataaaataaagtcaaattgtttttatataagctat 4006716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 571
Target Start/End: Complemental strand, 24836330 - 24836267
Alignment:
Q  507 ttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||| || |||||||||||||||||||||||||| || |||||| |||| ||||| ||||    
T  24836330 ttatgtata-agttatttctataacaaaagataaaataaagtcaaattgttttcgtataaactat 24836267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 281967 - 281916
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||| ||||||||||||||||||||| || || ||| |||||||||||||||    
T  281967 tattcctataacaaaagataaaataaagtcaacttgttttcatataagctat 281916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 1402947 - 1402998
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||||||||| || ||| |  |||||||||||||||    
T  1402947 tatttctataacaaaagataaaataaagttaaactattttcatataagctat 1402998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 9093675 - 9093624
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| ||||||||||||||| || |||||| |||| ||||||||||    
T  9093675 tatttctatatcaaaagataaaataaagttaaattgttttcgtataagctat 9093624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 22742317 - 22742368
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||| ||||||||| |||||||||| || |||||| |||||||||||||||    
T  22742317 tatttgtataacaaaggataaaataaagtcaaattgttttcatataagctat 22742368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 5550065 - 5550134
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| || |||||| |||| || |||||| |||| || |||||| |||||||||||||||    
T  5550065 aagtgcttatgtatatag-tatttcgataataagagataacataaagtcaaattgttttcatataagctat 5550134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 7713983 - 7714025
Alignment:
Q  527 ataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||||||||||||||||| || |||||| |||||||||||||    
T  7713983 ataacaaaagataaaataaagtcaaattgttttcatataagct 7714025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 11340762 - 11340693
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||| || || ||  ||||||||| |||||    
T  11340762 aagtgcttatatata-agataattctataacaaaagataaaataaagttaatttattttcatatacgctat 11340693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 21959661 - 21959730
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||| ||||| || |||||| ||||||||||||||||||| || || ||| || ||||||||||||    
T  21959661 aagtgcttaagtata-agctatttccataacaaaagataaaataaagtcaatttgtttgcatataagctat 21959730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 567
Target Start/End: Complemental strand, 32386700 - 32386635
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    |||||||||||||||||  ||||||  ||| |||||||||||||| || |||||| |||||||||||    
T  32386700 aagtgcttatgtatagac-tatttcactaagaaaagataaaataaggtcaaattgttttcatataag 32386635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Complemental strand, 4247771 - 4247731
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaa 542  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  4247771 aagtgcttatgtata-agctatttctataacaaaagataaaa 4247731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 567
Target Start/End: Complemental strand, 9582711 - 9582670
Alignment:
Q  526 tataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    |||||||||||||||||||| ||||||||| ||| |||||||    
T  9582711 tataacaaaagataaaataaagtgaaattgtttttatataag 9582670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 571
Target Start/End: Complemental strand, 10452496 - 10452428
Alignment:
Q  502 agtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||| || |||||||||||||||| |||||||||  | ||| |  |||||||||||||||    
T  10452496 agtgcttatgtata-agctatttctataacaaaatataaaataaaatcaaactattttcatataagctat 10452428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Original strand, 31461611 - 31461651
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaa 542  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  31461611 aagtgcttatgtata-agctatttctataacaaaagataaaa 31461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 545
Target Start/End: Complemental strand, 33068695 - 33068655
Alignment:
Q  504 tgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  33068695 tgcttatgtata-agttatttctataacaaaagataaaataa 33068655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 2514635 - 2514678
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||    
T  2514635 aagtgcttatgtata-agctatttctataataaaagataaaataa 2514678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 20672002 - 20671935
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||| ||||||||| || |||||||| | ||||||||||||||| || |||||| |||| ||||||||    
T  20672002 aagtgattatgtata-agctatttctagatcaaaagataaaataaagtcaaattgttttcgtataagct 20671935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 29940729 - 29940796
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||||||| ||||| || | |||||||||||||||||||||||| || || ||| |||||| ||||||    
T  29940729 aagtgcttaagtata-agctttttctataacaaaagataaaataaagtcaatttgttttcatttaagct 29940796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 544
Target Start/End: Original strand, 33416317 - 33416360
Alignment:
Q  500 aaagtgcttatgtatagagatatttctataacaaaagataaaata 544  Q
    |||||||||||||||| || ||||| |||||||||||||||||||    
T  33416317 aaagtgcttatgtata-agctatttttataacaaaagataaaata 33416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 30024651 - 30024702
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||||||    
T  30024651 tatttctataacaaaagataaaataaagtaaaattgttttcatataagctat 30024702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 4071833 - 4071884
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||||||||| || |||||  |||||||||||||||    
T  4071833 tatttctataacaaaagataaaataaagtcaaattattttcatataagctat 4071884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 571
Target Start/End: Original strand, 6364087 - 6364151
Alignment:
Q  506 cttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| || |||||||||||||||||||||||||| ||||||||   |||| |||||||||    
T  6364087 cttatgtata-agctatttctataacaaaagataaaataaagtgaaattctgttcacataagctat 6364151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 585
Target Start/End: Complemental strand, 25487679 - 25487599
Alignment:
Q  504 tgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctatcttggggaacttat 585  Q
    |||||||||||| || |||||||||||||||| ||||||||| || |  ||  |||||||||||||||  ||||||||||||    
T  25487679 tgcttatgtata-agctatttctataacaaaaaataaaataaagtcacgtttttttcatataagctattctggggaacttat 25487599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 571
Target Start/End: Complemental strand, 30338727 - 30338660
Alignment:
Q  503 gtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||| |  |||||||||||||||||||| ||||| || ||| || |||||||||||||||    
T  30338727 gtgcttatgtataaac-tatttctataacaaaagatagaataaagttaaactgttttcatataagctat 30338660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 51098254 - 51098317
Alignment:
Q  507 ttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||| ||||||| |||| | ||||||||||||||||| ||| ||||||||||||| ||||    
T  51098254 ttatgtata-agatattcctattataaaagataaaataacgtcaaactgctttcatataaactat 51098317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 47119084 - 47119033
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| |||||||||||| || || |||||| |||||||||||||||    
T  47119084 tatttctatatcaaaagataaaacaaagttaaattgttttcatataagctat 47119033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 49219090 - 49219141
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||| ||||||||| || |||||  |||||||||||||||    
T  49219090 tatttctataacaaaatataaaataaagtcaaattattttcatataagctat 49219141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 567
Target Start/End: Original strand, 52735073 - 52735120
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    ||||||| |||||||||||||||||| || ||||| ||||||||||||    
T  52735073 tatttctgtaacaaaagataaaataaagtcaaattactttcatataag 52735120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 54325156 - 54325105
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||| |||||||||||||||| || ||| || |||||||||||||||    
T  54325156 tatttctattacaaaagataaaataaagtcaaactgttttcatataagctat 54325105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 8130107 - 8130176
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||| |||| ||| | ||||||||||||||||||| |||| || |||||  |||||||||||||||    
T  8130107 aagtgcttacgtat-gagttctttctataacaaaagataacataaagtcaaattattttcatataagctat 8130176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 47970251 - 47970292
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  47970251 aagtgcttatgtata-agctatttctataacaaaagataaaat 47970292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Original strand, 4191672 - 4191712
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaa 542  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  4191672 aagtgcttatgtata-agctatttctataacaaaagataaaa 4191712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 22684635 - 22684586
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||||||||||||| | |||||||| || |||||| |||||||||||||    
T  22684635 tatttctataacaaacggtaaaataaagtcaaattgttttcatataagct 22684586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 41701560 - 41701511
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||| |||||||||||||||||||| || |||| | |||||||||||||    
T  41701560 tatttatataacaaaagataaaataaagtcaaatcgttttcatataagct 41701511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 563
Target Start/End: Complemental strand, 52294083 - 52294042
Alignment:
Q  522 tttctataacaaaagataaaataacgtgaaattgctttcata 563  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  52294083 tttctataaccaaagataaaataaagtgaaattgttttcata 52294042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 571
Target Start/End: Original strand, 53626729 - 53626778
Alignment:
Q  522 tttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||||||||||||  | ||| || |||||||||||||||    
T  53626729 tttctataacaaaagataaaataaattcaaaatgttttcatataagctat 53626778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 4798696 - 4798653
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || |||||||||| |||||||||||||||    
T  4798696 aagtgcttatgtata-agctatttctatatcaaaagataaaataa 4798653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 17884019 - 17884071
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctatc 572  Q
    |||||||||||||||||||||||||| || |||||| |||  |||||| ||||    
T  17884019 tatttctataacaaaagataaaataaagttaaattgtttttgtataagttatc 17884071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 28623222 - 28623265
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||    
T  28623222 aagtgcttatgtata-agttatttatataacaaaagataaaataa 28623265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 44007991 - 44007939
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctatc 572  Q
    |||| ||||| ||||||||||||||| |  |||||| ||||||||||||||||    
T  44007991 tattactataccaaaagataaaataaagacaaattgttttcatataagctatc 44007939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 51044596 - 51044553
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||    
T  51044596 aagtgtttatgtata-agctatttctataacaaaagataaaataa 51044553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 570
Target Start/End: Complemental strand, 54327566 - 54327518
Alignment:
Q  522 tttctataacaaaagataaaataacgtgaaattgctttcatataagcta 570  Q
    ||||||||||||||||||||| || || ||| || ||||||||||||||    
T  54327566 tttctataacaaaagataaaacaaagtcaaactgttttcatataagcta 54327518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 27509 - 27578
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| || ||||||||||||| |||||||||||| || |||||| |||||||||| ||||    
T  27509 aagtgcttatgtata-agttatttctataacagaagataaaataaagtcaaattgttttcatataaactat 27578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 1112786 - 1112855
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||  | |||||||||||||||||||||||||| || |||||| ||||| |||||||||    
T  1112786 aagtgcttatgtatat-gctatttctataacaaaagataaaataaggttaaattgttttcacataagctat 1112855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 1470975 - 1470924
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||| |||||||||||||| || ||||| ||||||||||||||||    
T  1470975 tatttctataataaaagataaaataaagtcaaattactttcatataagctat 1470924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 42597334 - 42597403
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||| |||||||||| || |||||||||||||||||||||||||| || |||||| ||||||  |||||||    
T  42597334 aagtacttatgtata-agctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctat 42597403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 571
Target Start/End: Complemental strand, 42237535 - 42237490
Alignment:
Q  526 tataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||| || |||||| |||||||||||||||    
T  42237535 tataacaaaagataaaataaagttaaattgttttcatataagctat 42237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 35374492 - 35374441
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| | ||||||||||||| || |||||| |||||||||||||||    
T  35374492 tatttctatagcgaaagataaaataaagttaaattgttttcatataagctat 35374441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 571
Target Start/End: Complemental strand, 3537149 - 3537099
Alignment:
Q  521 atttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||| ||||||||||||||| || |||||| |||| ||||||||||    
T  3537149 atttctatagcaaaagataaaataaagtcaaattgttttcgtataagctat 3537099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 4558731 - 4558800
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||| ||||||||| || ||||||||||| |||||||||||||| || |||||  ||||||||| |||||    
T  4558731 aagtgtttatgtata-agctatttctataataaaagataaaataaagttaaattattttcatatatgctat 4558800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 567
Target Start/End: Original strand, 13652148 - 13652213
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    ||||||||||||||| || |||||||||| ||||||||  ||| | ||||||||| |||||||||||    
T  13652148 aagtgcttatgtata-agctatttctatagcaaaagatggaatgaagtgaaattgttttcatataag 13652213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 567
Target Start/End: Original strand, 13710791 - 13710856
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    ||||||||||||||| || |||||||||| ||||||||  ||| | ||||||||| |||||||||||    
T  13710791 aagtgcttatgtata-agctatttctatagcaaaagatggaatgaagtgaaattgttttcatataag 13710856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 555
Target Start/End: Original strand, 14482135 - 14482188
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattg 555  Q
    ||||||||||||||| |  |||||||||||||||||||||||||| || ||||||    
T  14482135 aagtgcttatgtataaac-tatttctataacaaaagataaaataaagtcaaattg 14482188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 567
Target Start/End: Original strand, 7026688 - 7026729
Alignment:
Q  526 tataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    |||||||||||||||||||| || |||||| |||||||||||    
T  7026688 tataacaaaagataaaataaagtaaaattgttttcatataag 7026729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 14280520 - 14280467
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctatct 573  Q
    |||||||||| ||||||||||||| |  | |||||| |||||||||||||||||    
T  14280520 tatttctatagcaaaagataaaattaaattaaattgttttcatataagctatct 14280467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 10114423 - 10114466
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || |||||||||| |||||||||||||||    
T  10114423 aagtgcttatgtata-agctatttctatagcaaaagataaaataa 10114466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 545
Target Start/End: Complemental strand, 11119132 - 11119093
Alignment:
Q  505 gcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  11119132 gcttatgtatac-gatatttctataacaaaagataaaataa 11119093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 11188292 - 11188249
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || | ||||||||||||||||||||||||    
T  11188292 aagtgcttatgtata-agttgtttctataacaaaagataaaataa 11188249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 545
Target Start/End: Original strand, 26215433 - 26215472
Alignment:
Q  505 gcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  26215433 gcttatgtata-agctatttctataacaaaagataaaataa 26215472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 569
Target Start/End: Complemental strand, 37444548 - 37444485
Alignment:
Q  505 gcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||||||||| || |||| ||||||||||||||||| ||| || |||||| |||| ||||||||    
T  37444548 gcttatgtata-agctattactataacaaaagataaagtaaagttaaattgttttcgtataagct 37444485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 11344421 - 11344352
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||| ||| |||||||||||||||||||||||||| || || |||||| ||||||| |||||||    
T  11344421 aagtgcttatgcata-agatatttctataacaaaagataaaagaaagtcaaattgttttcatacaagctat 11344352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 567
Target Start/End: Original strand, 3673740 - 3673805
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    ||||||||||||||  || |||||||||||||||| ||||||||| || |||||| |||||||||||    
T  3673740 aagtgcttatgtatt-agttatttctataacaaaatataaaataaagttaaattgttttcatataag 3673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 10143105 - 10143174
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| || |||||||||||||||||||||||| | || ||| || ||| |||||||||||    
T  10143105 aagtgcttatgtata-agttatttctataacaaaagataaaattaagtcaaactgtttttatataagctat 10143174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 18962175 - 18962106
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||  || ||||| |||||||||||||||||||| || ||| || |||||||||||||||    
T  18962175 aagtgcttatgtatt-agctatttttataacaaaagataaaataaagttaaactgttttcatataagctat 18962106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 570
Target Start/End: Complemental strand, 28803643 - 28803575
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagcta 570  Q
    |||||||||| |||| || |||||| ||||||||||||||||||| || ||| || ||||||||||||||    
T  28803643 aagtgcttatatata-agttatttcgataacaaaagataaaataaagtcaaactgatttcatataagcta 28803575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 571
Target Start/End: Complemental strand, 31740092 - 31740027
Alignment:
Q  506 cttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| || |||||||||||| ||||||||||||| || ||| |  |||||||||||||||    
T  31740092 cttatgtataaagctatttctataactaaagataaaataaagtcaaactattttcatataagctat 31740027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 34055038 - 34054995
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    |||||||||||||||| | ||||||||||||||||||||||||||    
T  34055038 aagtgcttatgtatag-gctatttctataacaaaagataaaataa 34054995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 2416246 - 2416315
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| || ||||||| || ||||||||||||| | || |||||| ||| |||||||||||    
T  2416246 aagtgcttatgtata-agttatttctgtagcaaaagataaaatgaagttaaattgttttgatataagctat 2416315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 563
Target Start/End: Original strand, 10150688 - 10150749
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcata 563  Q
    ||||| ||||||||| || ||||||||||| ||||||||||||||||| |||| | |||||||    
T  10150688 aagtgtttatgtata-agttatttctataataaaagataaaataacgttaaatggttttcata 10150749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 571
Target Start/End: Original strand, 11513858 - 11513900
Alignment:
Q  529 aacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||||| || |||||| |||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctat 11513900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 570
Target Start/End: Complemental strand, 17952820 - 17952770
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagcta 570  Q
    |||||||||||||||||||||||||| || ||| |  ||||||||||||||    
T  17952820 tatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 25609729 - 25609798
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| || || ||  |||| ||||||||||    
T  25609729 aagtgcttatgtata-agctatttctataagaaaagataaaataaagtcaatttattttcgtataagctat 25609798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 567
Target Start/End: Original strand, 37053527 - 37053592
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    |||||||||||||||||  ||||||||||||| || ||||||||| || ||| || |||||||||||    
T  37053527 aagtgcttatgtatagac-tatttctataacagaaaataaaataaagtcaaactgttttcatataag 37053592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 517 - 555
Target Start/End: Original strand, 39567851 - 39567889
Alignment:
Q  517 agatatttctataacaaaagataaaataacgtgaaattg 555  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  39567851 agatatttctataacaaaagataaaataaagttaaattg 39567889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 545
Target Start/End: Original strand, 5133708 - 5133748
Alignment:
Q  504 tgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  5133708 tgcttatgtata-agctatttctataacaaaagataaaataa 5133748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 40837547 - 40837502
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatata 565  Q
    |||||||||||||||||||||| ||| || |||||| |||||||||    
T  40837547 tatttctataacaaaagataaattaaagtcaaattgttttcatata 40837502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Complemental strand, 41033087 - 41033047
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaa 542  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  41033087 aagtgcttatgtata-agctatttctataacaaaagataaaa 41033047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 552
Target Start/End: Complemental strand, 1939451 - 1939419
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaa 552  Q
    |||||||||||||||||||||||||| ||||||    
T  1939451 tatttctataacaaaagataaaataaagtgaaa 1939419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 45999425 - 45999356
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||| || ||| ||||||||||||||||||    
T  45999425 aagtgctcatgtata-agctatttctataacaaaagataagataaagtcaaactgctttcatataagctat 45999356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 15360845 - 15360896
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||||||||| || ||| || |||||||||||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 15360896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 31517859 - 31517808
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||| ||||||||||||||||| || |||||| |||||||||||||||    
T  31517859 tatttctacaacaaaagataaaataaagttaaattgatttcatataagctat 31517808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 49517021 - 49517072
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||||||||| || |||||| |||||| ||||||||    
T  49517021 tatttctataacaaaagataaaataaagtcaaattgttttcatttaagctat 49517072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 571
Target Start/End: Complemental strand, 27738297 - 27738248
Alignment:
Q  522 tttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||| ||||||||||||||||| || |||||| |||||||||||||||    
T  27738297 tttctacaacaaaagataaaataaagtcaaattgttttcatataagctat 27738248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 571
Target Start/End: Complemental strand, 44032116 - 44032067
Alignment:
Q  522 tttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| |||||||| || |||||| |||||||||||||||    
T  44032116 tttctataacaaaagctaaaataaagtcaaattgttttcatataagctat 44032067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 521 - 576
Target Start/End: Complemental strand, 1879145 - 1879090
Alignment:
Q  521 atttctataacaaaagataaaataacgtgaaattgctttcatataagctatcttgg 576  Q
    |||||||||||| |||||||||||| || ||| || ||||||||||||| ||||||    
T  1879145 atttctataacagaagataaaataaagtcaaaatgttttcatataagctgtcttgg 1879090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 4200180 - 4200231
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||| |||||||||||||||||||| || || ||| |||||||||||||||    
T  4200180 tatttttataacaaaagataaaataaagtcaagttgttttcatataagctat 4200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 9572227 - 9572176
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| ||||||||||||||| || ||||||||||  ||||||||||    
T  9572227 tatttctatagcaaaagataaaataaagttaaattgcttttgtataagctat 9572176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 563
Target Start/End: Complemental strand, 14737824 - 14737781
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcata 563  Q
    |||||||||||||||||||||||||| || |||||| |||||||    
T  14737824 tatttctataacaaaagataaaataaagtcaaattgttttcata 14737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 568
Target Start/End: Original strand, 17269183 - 17269249
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagc 568  Q
    ||||||||||||||| || |||||||| ||||||||  ||||||| || |||||| ||||||||||||    
T  17269183 aagtgcttatgtata-agttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagc 17269249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 18434597 - 18434546
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||| ||||||||||||||||||| || ||| |||| |||||||||||||    
T  18434597 tatttccataacaaaagataaaataaagtcaaactgctctcatataagctat 18434546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 26630414 - 26630465
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||| || |||||| || |||||| |||||||||||||||    
T  26630414 tatttctataacaaaaaatgaaataaagtaaaattgttttcatataagctat 26630465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 30259606 - 30259555
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||| ||||||||| || ||| |||||| |||||||||||    
T  30259606 tatttctataacaaaatataaaataaagtcaaactgctttgatataagctat 30259555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 571
Target Start/End: Complemental strand, 34619512 - 34619446
Alignment:
Q  504 tgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||| ||  ||||||||||||||||||||||||| || |||||| |||  ||||||||||    
T  34619512 tgcttatgtata-agccatttctataacaaaagataaaataaggttaaattgtttttgtataagctat 34619446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 39777614 - 39777665
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||||||||||||| ||||| || ||| |||||||||| |||||||    
T  39777614 tatttctataacaaaagatagaataaagtcaaactgctttcatacaagctat 39777665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 45990177 - 45990126
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||| |||| ||||||||||||||| || |||||| |||||||||||||||    
T  45990177 tatttttatatcaaaagataaaataaagtaaaattgttttcatataagctat 45990126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 570
Target Start/End: Complemental strand, 15687192 - 15687142
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagcta 570  Q
    |||||||||||||||| ||||||||| || |||||| |||| |||||||||    
T  15687192 tatttctataacaaaatataaaataaagttaaattgttttcgtataagcta 15687142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 517 - 571
Target Start/End: Original strand, 25479529 - 25479583
Alignment:
Q  517 agatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||| |||||||||| |||||||||||||||| ||||||  |||||||| |||||    
T  25479529 agatctttctataaccaaagataaaataacgtcaaattgtcttcatataggctat 25479583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 27140436 - 27140485
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||||||||||||||||||||||||  | |||||| ||| |||||||||    
T  27140436 tatttctataacaaaagataaaataatattaaattgtttttatataagct 27140485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 571
Target Start/End: Original strand, 30371105 - 30371150
Alignment:
Q  526 tataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||||||||  | |||||| |||||||||||||||    
T  30371105 tataacaaaagataaaataaactcaaattgttttcatataagctat 30371150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 589
Target Start/End: Complemental strand, 38651546 - 38651461
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctatcttggggaacttataaaa 589  Q
    ||||||||||||||| || || ||||||||||||||||||| ||| ||  ||||| ||||  |||||||||| ||| || |||||||||    
T  38651546 aagtgcttatgtata-agctaattctataacaaaagataaactaaagtcgaattgttttc--ataagctatcctggagagcttataaaa 38651461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 563
Target Start/End: Original strand, 50319230 - 50319286
Alignment:
Q  506 cttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcata 563  Q
    |||||||||| || |||||||||||||||||||||||||| || || ||| |||||||    
T  50319230 cttatgtata-agctatttctataacaaaagataaaataaagtcaagttgttttcata 50319286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 545
Target Start/End: Original strand, 6976885 - 6976924
Alignment:
Q  505 gcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  6976885 gcttatgtata-agatatttctataacaaaagataagataa 6976924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 541
Target Start/End: Original strand, 13037797 - 13037836
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaa 541  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  13037797 aagtgcttatgtata-agctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 545
Target Start/End: Original strand, 25707108 - 25707136
Alignment:
Q  517 agatatttctataacaaaagataaaataa 545  Q
    |||||||||||||||||||||||||||||    
T  25707108 agatatttctataacaaaagataaaataa 25707136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 570
Target Start/End: Complemental strand, 28467420 - 28467376
Alignment:
Q  526 tataacaaaagataaaataacgtgaaattgctttcatataagcta 570  Q
    |||||||||||||||||||| || |||||  ||||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagcta 28467376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 541
Target Start/End: Complemental strand, 29046050 - 29046011
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaa 541  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  29046050 aagtgcttgtgtata-agatatttctataacaaaagataaa 29046011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 567
Target Start/End: Complemental strand, 36151636 - 36151577
Alignment:
Q  507 ttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    ||||||||| || |||||| ||||||||||||||||||| || |||||| |||| ||||||    
T  36151636 ttatgtata-agctatttcaataacaaaagataaaataaagtcaaattgttttcgtataag 36151577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 46499991 - 46499924
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    |||||||||| |||| || ||||||||||| |||||||||||||| || |||||| ||| || ||||||    
T  46499991 aagtgcttatctata-agctatttctataagaaaagataaaataaagtcaaattgtttttatttaagct 46499924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 33894556 - 33894622
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||||||||||||| || |||||||||||||||||||||||||| || ||| || |||||||||||||    
T  33894556 aagtgcttatgtata-agctatttctataacaaaagataaaataa-gtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 569
Target Start/End: Complemental strand, 27121718 - 27121656
Alignment:
Q  506 cttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    |||||||||| |||||||||||||| ||| |||||||||| || |||||| |||||||||||||    
T  27121718 cttatgtata-agatatttctataataaatgataaaataaagtcaaattgttttcatataagct 27121656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 567
Target Start/End: Complemental strand, 39591586 - 39591539
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||    
T  39591586 tatttctataacaaaagataaaataaagtcaaattgttttcatataag 39591539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 48157239 - 48157188
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||| |||||||||||||| ||||||||| ||| |||||||||||    
T  48157239 tatttctataataaaagataaaataaagtgaaattgttttaatataagctat 48157188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 28165024 - 28165093
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||||||||| || | |||||||||||||||||||||| | || |||||| ||| |||||||||||    
T  28165024 aagtgcttatgtata-agttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctat 28165093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 567
Target Start/End: Original strand, 35536044 - 35536105
Alignment:
Q  505 gcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    ||||||||||| || ||||||||||||| |||||||||||| || |||||| |||||||||||    
T  35536044 gcttatgtata-agctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 568
Target Start/End: Original strand, 1417215 - 1417263
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagc 568  Q
    ||||| |||||||||||||||||||| || |||||| ||||||||||||    
T  1417215 tatttatataacaaaagataaaataaagtcaaattgttttcatataagc 1417263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 31908429 - 31908377
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctatc 572  Q
    |||||| ||||||| |||| |||||| || |||||||||||||||||||||||    
T  31908429 tatttcgataacaatagatgaaataaagtcaaattgctttcatataagctatc 31908377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 12835056 - 12835005
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||| ||||||||||||||||| || |||||| |||||||| ||||||    
T  12835056 tatttctacaacaaaagataaaataaagtcaaattgttttcatattagctat 12835005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 571
Target Start/End: Original strand, 23918912 - 23918959
Alignment:
Q  524 tctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||| |||||||||||||||| || |||||| |||||||||||||||    
T  23918912 tctattacaaaagataaaataaagtcaaattgttttcatataagctat 23918959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 567
Target Start/End: Complemental strand, 30456569 - 30456522
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataag 567  Q
    |||||||| ||||||||||||||||| || |||||| |||||||||||    
T  30456569 tatttctaaaacaaaagataaaataaagtcaaattgttttcatataag 30456522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 40689105 - 40689054
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| ||||||||||||||| || |||||  |||||||||||||||    
T  40689105 tatttctatagcaaaagataaaataaagttaaattattttcatataagctat 40689054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 570
Target Start/End: Original strand, 22759137 - 22759187
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagcta 570  Q
    ||||| |||||||||||||||||||| |  |||||| ||||||||||||||    
T  22759137 tatttgtataacaaaagataaaataaaggaaaattgttttcatataagcta 22759187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 544
Target Start/End: Complemental strand, 35809044 - 35808999
Alignment:
Q  498 ataaagtgcttatgtatagagatatttctataacaaaagataaaata 544  Q
    |||||||| ||||||||| || |||||||||||||||||||||||||    
T  35809044 ataaagtgtttatgtata-agctatttctataacaaaagataaaata 35808999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 585
Target Start/End: Original strand, 42656466 - 42656531
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagctatcttggggaacttat 585  Q
    |||||||||||||||||||||||||| || ||||   |||  ||||||||||||||| || |||||    
T  42656466 tatttctataacaaaagataaaataaagtcaaatcatttttgtataagctatcttggagagcttat 42656531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 43318647 - 43318598
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    ||||||||||||||| |||||||||| || |||||| | |||||||||||    
T  43318647 tatttctataacaaatgataaaataaagtcaaattgttatcatataagct 43318598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 568
Target Start/End: Original strand, 46825052 - 46825097
Alignment:
Q  523 ttctataacaaaagataaaataacgtgaaattgctttcatataagc 568  Q
    |||||||| |||||||||||||| || |||||| ||||||||||||    
T  46825052 ttctataaaaaaagataaaataaagtcaaattgttttcatataagc 46825097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 47046227 - 47046178
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattgctttcatataagct 569  Q
    |||||||| |||||| |||||||||| || |||||| |||||||||||||    
T  47046227 tatttctacaacaaaggataaaataaagtcaaattgttttcatataagct 47046178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 5373158 - 5373201
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  5373158 aagtgcttatgtatat-gctatttctataacaaaagataaaataa 5373201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 24973877 - 24973920
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||| | || ||||||||||||||||||||||||||    
T  24973877 aagtgcttatgtaaa-agctatttctataacaaaagataaaataa 24973920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 31341130 - 31341197
Alignment:
Q  504 tgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctatc 572  Q
    |||||||||||| || ||||| |||||||||||||||||||| || ||| || ||| ||||||| ||||    
T  31341130 tgcttatgtata-agctatttgtataacaaaagataaaataaagtcaaactggttttatataagttatc 31341197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 43153021 - 43152969
Alignment:
Q  520 tatttctataacaaaagataaaataacgtgaaattg-ctttcatataagctat 571  Q
    |||||||||||||||||||||||||| || ||||||  ||||||| |||||||    
T  43153021 tatttctataacaaaagataaaataaagttaaattgtttttcatacaagctat 43152969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 571
Target Start/End: Complemental strand, 45813315 - 45813248
Alignment:
Q  503 gtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||| |||| || |||||||||| ||||||||||||||| || || ||| |||||||||| ||||    
T  45813315 gtgcttatttata-agctatttctataccaaaagataaaataaagtcaacttgttttcatataatctat 45813248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 49060479 - 49060542
Alignment:
Q  507 ttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    ||||||||| || |||||||||||||||| ||||||||| || |||||  ||| |||||||||||    
T  49060479 ttatgtata-agctatttctataacaaaaaataaaataaagtcaaattatttttatataagctat 49060542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 1211 - 1168
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  1211 aagtgcttatgtata-agctatttctataacaaaagataaaataa 1168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 2764 - 2807
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataa 545  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  2764 aagtgcttatgtata-agctatttctataacaaaagataaaataa 2807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 1861 - 1792
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||| || || ||  ||||||||| |||||    
T  1861 aagtgcttatatata-agataattctataacaaaagataaaataaagttaatttattttcatatacgctat 1792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 3951 - 3882
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaataacgtgaaattgctttcatataagctat 571  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||| || || ||  ||||||||| |||||    
T  3951 aagtgcttatatata-agataattctataacaaaagataaaataaagttaatttattttcatatacgctat 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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