View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18559_low_4 (Length: 608)
Name: NF18559_low_4
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18559_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 15 - 592
Target Start/End: Original strand, 49034640 - 49035222
Alignment:
| Q |
15 |
ataataacatccatttatgatgataggtggttgtaattggggacaaggtaatatctgaaggagaatggatctcgttgaatggatccacaggtgaggtgat |
114 |
Q |
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| T |
49034640 |
ataataacatccatttatgatgataggtggttgtaattggggacaaggtaatatctgaaggagaatggatctcgttgaatggatccacaggtgaggtgat |
49034739 |
T |
|
| Q |
115 |
tctaggaaagcaaacactttctcctccggcattaagtgaggatttggaaactttcatgtcttgggctgatcaaataaggaagctgaaggtgagctgaatc |
214 |
Q |
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| T |
49034740 |
tctaggaaagcaaacactttctcctccggcattaagtgaggatttggaaactttcatgtcttgggctgatcaaataaggaagctgaaggtgagctgaatc |
49034839 |
T |
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| Q |
215 |
aaaaca-ttcattcatgtttggtaatttcactcatatcattgttgtgtatcaggttttggcaaattgtgacacacctgaagatgcaataac-agctagaa |
312 |
Q |
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| T |
49034840 |
aaaacatttcattcatgtttggtaatttcactcatatcattgttgtgtatcaggttttggcaaattgtgacacacctgaagatgcaataacaagctagaa |
49034939 |
T |
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| Q |
313 |
gaaa--tggt-gcacaaggaattggactttgcaggactgaacacatggtacaaataatattcaactccttgttataactaactaaaacgtgtgagtgcat |
409 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49034940 |
gaaaataggtggcacaaggaattggactttgcaggactgaacacatggtacaaataatattcaactccttgttataactaactaaaacgtgtgagtgcat |
49035039 |
T |
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| Q |
410 |
taaaatttaaaaggcttgtattgtagttttgttataacaagttttagcattgcttttcgaaatnnnnnnnnnnnncactcatgtagagcgagcataagat |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49035040 |
taaaatttaaaaggcttgtattgtagttttgttataacaagttttagcattgcttttcgaaataaaaagaaaaaacactcatgtagagcgagcataagat |
49035139 |
T |
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| Q |
510 |
aaaaatgatcctttttgtatgctataagtttggtgtgttttagttttttgcttcagatgaaaggctaaaggctgtgagaagga |
592 |
Q |
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| T |
49035140 |
aaaaatgatcctttttgtatgctataagtttggtgtgttttagttttttgcttcagatgaaaggctaaaggctgtgagaagga |
49035222 |
T |
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