View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18559_low_6 (Length: 588)

Name: NF18559_low_6
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18559_low_6
NF18559_low_6
[»] chr2 (3 HSPs)
chr2 (247-371)||(32678470-32678593)
chr2 (441-570)||(32678282-32678400)
chr2 (278-343)||(12251644-12251709)
[»] chr5 (2 HSPs)
chr5 (153-240)||(40180061-40180149)
chr5 (97-129)||(38604490-38604522)
[»] chr3 (1 HSPs)
chr3 (299-336)||(8525513-8525550)
[»] chr8 (1 HSPs)
chr8 (80-129)||(34501758-34501807)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 247 - 371
Target Start/End: Complemental strand, 32678593 - 32678470
Alignment:
Q  247 gtttttatagtctatgcttggcgaacaatattcattttcattcaatatgatagttaatatttctatttgaatctatggctcgagaatgtctaaccaccac 346  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32678593 gtttttatagtctatgcttggcgaacaatagtcattttcattcaatataatagttaat-tttctatttgaatctatggctcgagaatgtctaaccaccac 32678495  T
Q  347 atgaaatatacatgcagactcatcc 371  Q
    |||||||||||||||||||||||||    
T  32678494 atgaaatatacatgcagactcatcc 32678470  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 441 - 570
Target Start/End: Complemental strand, 32678400 - 32678282
Alignment:
Q  441 ctttacttttatttatatttaaaactggagcgaatattagaaaagaatggcctaagtccnnnnnnngaaggaaagtgcaaggaaatagacggggagtaga 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||           |||||||||||||| ||||||||||||||||||    
T  32678400 ctttacttttatttatatttaaaactggagcgaatattagaaaagaatggctaaag-----------aaggaaagtgcaagaaaatagacggggagtaga 32678312  T
Q  541 cactaaagcattagtagtgatcaacagaca 570  Q
    ||||||||||||||||||||||||||||||    
T  32678311 cactaaagcattagtagtgatcaacagaca 32678282  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 12251644 - 12251709
Alignment:
Q  278 tcattttcattcaatatgatagttaatatttctatttgaatctatggctcgagaatgtctaaccac 343  Q
    |||| |||||||||||| || |||| ||||||||||||||||||||| | ||||||||||| ||||    
T  12251644 tcatgttcattcaatataattgttactatttctatttgaatctatggatggagaatgtctatccac 12251709  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 40180061 - 40180149
Alignment:
Q  153 aatcacattgaaagctagttctgaaggacacggtggcggagtctctgcaatcattttaaagatcaac-gcttggctgcataaaaatctt 240  Q
    ||||||||||||| ||  || |||||||| | || |||||   |||||||||||||||||||||||| |||||||||||| ||||||||    
T  40180061 aatcacattgaaaacttcttttgaaggacgctgtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctt 40180149  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 38604490 - 38604522
Alignment:
Q  97 tgtataaacctatactttccaatagcaacacca 129  Q
    |||||||||||||||||||||||||||||||||    
T  38604490 tgtataaacctatactttccaatagcaacacca 38604522  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 8525513 - 8525550
Alignment:
Q  299 gttaatatttctatttgaatctatggctcgagaatgtc 336  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  8525513 gttaatatttctattggaatctatggctcgagaatgtc 8525550  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 34501758 - 34501807
Alignment:
Q  80 cataacagtatcacaaatgtataaacctatactttccaatagcaacacca 129  Q
    ||||| || |||||||||||||| ||| |||||||||||||||| |||||    
T  34501758 cataagaggatcacaaatgtatacaccaatactttccaatagcatcacca 34501807  T

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