View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18559_low_9 (Length: 511)

Name: NF18559_low_9
Description: NF18559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18559_low_9
NF18559_low_9
[»] chr5 (2 HSPs)
chr5 (1-473)||(18541215-18541683)
chr5 (424-469)||(28452596-28452641)
[»] chr1 (1 HSPs)
chr1 (428-462)||(32722234-32722268)
[»] chr6 (2 HSPs)
chr6 (420-462)||(32908382-32908424)
chr6 (420-452)||(27832653-27832685)
[»] chr4 (1 HSPs)
chr4 (427-487)||(43061677-43061737)
[»] chr2 (2 HSPs)
chr2 (424-469)||(16698737-16698782)
chr2 (424-460)||(26610433-26610469)
[»] chr8 (1 HSPs)
chr8 (426-462)||(43534943-43534979)
[»] chr3 (1 HSPs)
chr3 (422-454)||(53791952-53791984)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 18541215 - 18541683
Alignment:
Q  1 agaagtcaaaagcagcaagaaagctaaagacaaagacaataagcacttgcaacacaaattcagccttgaaagagcattcagtggaatacatttgcagcat 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18541215 agaagtcaaaagcagcaagaaagctaaagacagagacaataagcacttgcagcacaaattcagccttgaaagagcattcagtggaatacatttgcagcat 18541314  T
Q  101 ggtagcaatcatcaaaatgatgaaggtattgaagaccaagttatagaagttaagacattagagatagatgtagatggttccaaagagttatttgagacca 200  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18541315 ggtagcaatcatcaaaatgatgaaggtattggagagcaggttatagaagttaagacattagagatagatgtagatggttccaaagagttatttgagacca 18541414  T
Q  201 agttgaatgaagaaagaggagaagctgaggcaaggttttttcagaagcttgatgaagagcttaacaaggttaatgccttttataaggaacaggtggaggc 300  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18541415 agttgaatgaagaaagaggagaagctgaggcaaggttccttcagaagcttgatgaagagcttaacaaggttaatgccttttataaggaacaggtggaggc 18541514  T
Q  301 agttaagcatgaagcaacacttttgagtaaacaagttgagactctagttgcattgagggtaaaggttaaaaaccttgatccaggtaaatgcaaaatatgt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18541515 agttaagcatgaagcaacacttttgagtaaacaagttgagactctagttgcattaagggtaaaggttaaaaaccttgatccaggtaaatgcaaaatatgt 18541614  T
Q  401 ttttacacgtagttacattcatgacaccgacacatgtagttacattcaattattttattttcgaaaaattata 473  Q
    |||||||||    |||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||    
T  18541615 ttttacacg----tacatttatgacaccgacacacgtagttatattcaattattttatttacgaaaaaatata 18541683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 28452641 - 28452596
Alignment:
Q  424 acaccgacacatgtagttacattcaattattttattttcgaaaaat 469  Q
    ||||| |||||||| || ||||||||||||||||||||| ||||||    
T  28452641 acaccaacacatgtggtaacattcaattattttattttctaaaaat 28452596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 462
Target Start/End: Original strand, 32722234 - 32722268
Alignment:
Q  428 cgacacatgtagttacattcaattattttattttc 462  Q
    |||||||||||||||||||||||||||||||||||    
T  32722234 cgacacatgtagttacattcaattattttattttc 32722268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 462
Target Start/End: Complemental strand, 32908424 - 32908382
Alignment:
Q  420 catgacaccgacacatgtagttacattcaattattttattttc 462  Q
    ||||||||||||||| || |||||||||||||||| |||||||    
T  32908424 catgacaccgacacacgtggttacattcaattattctattttc 32908382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 27832685 - 27832653
Alignment:
Q  420 catgacaccgacacatgtagttacattcaatta 452  Q
    ||||||||||| |||||||||||||||||||||    
T  27832685 catgacaccgatacatgtagttacattcaatta 27832653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 43061677 - 43061737
Alignment:
Q  427 ccgacacatgtagttacattcaattattt-tattttcgaaaaattataactagtgtcgatgt 487  Q
    ||||||||||| ||||||||||||||||| |||||||   ||||||| ||||||||||||||    
T  43061677 ccgacacatgttgttacattcaattatttatattttc-tcaaattattactagtgtcgatgt 43061737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 469
Target Start/End: Original strand, 16698737 - 16698782
Alignment:
Q  424 acaccgacacatgtagttacattcaattattttattttcgaaaaat 469  Q
    ||||||||||||| |||||||||||||||||  |||||| ||||||    
T  16698737 acaccgacacatgcagttacattcaattattagattttctaaaaat 16698782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 26610433 - 26610469
Alignment:
Q  424 acaccgacacatgtagttacattcaattattttattt 460  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  26610433 acaccaacacatgtagttacactcaattattttattt 26610469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 43534979 - 43534943
Alignment:
Q  426 accgacacatgtagttacattcaattattttattttc 462  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  43534979 accgacacatgtagttacattcaaatatttcattttc 43534943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 454
Target Start/End: Original strand, 53791952 - 53791984
Alignment:
Q  422 tgacaccgacacatgtagttacattcaattatt 454  Q
    |||||||||||||||| ||||||||||||||||    
T  53791952 tgacaccgacacatgtggttacattcaattatt 53791984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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