View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1855_low_1 (Length: 697)
Name: NF1855_low_1
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1855_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 105 - 451
Target Start/End: Original strand, 27832624 - 27832950
Alignment:
| Q |
105 |
gaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtctgctct |
204 |
Q |
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| T |
27832624 |
gaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtctgctct |
27832723 |
T |
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| Q |
205 |
ctttgatctttgacttgatttgggggcctggtaacgacctatatttttatcatatcattattaattatttgcctgtgatgtatgaatattgtccgtacca |
304 |
Q |
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| T |
27832724 |
ctttgatctttgacttgatttgagggcctggtaacgacctatatttttatcatatcattattaattatttgcctgtgatgtatgaatattgtccgtacca |
27832823 |
T |
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| Q |
305 |
tctgagagattattctttgatcgatacaataattcttgaatccgaggcttcttcggttattgcatgtaattattgatgctttctgttttgattgagagaa |
404 |
Q |
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| T |
27832824 |
tctgagagattattctttgatcgatacaataattcttgaatctgaggcttcttc-----------------attca---tttctgttttgattgaaataa |
27832903 |
T |
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| Q |
405 |
taggcaacaatttagagtctctgatttgcttatactatagtgatttc |
451 |
Q |
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| T |
27832904 |
taggcaacaatttagagtctctgatttgcttatactatagtgatttc |
27832950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 100 - 252
Target Start/End: Original strand, 27827691 - 27827839
Alignment:
| Q |
100 |
taaacgaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaattgaatttcttaaggtccgcatgtct |
199 |
Q |
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| T |
27827691 |
taaacaaattcgtgcacaataagccgatggtctggaattaag-aatgaaggaatcattgctgtgtgcacgaaaattaaatttt---aggtccgcatgtct |
27827786 |
T |
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| Q |
200 |
gctctctttgatctttgacttgatttgggggcctggtaacgacctatattttt |
252 |
Q |
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| T |
27827787 |
gccctctatgatctttgatttgattttagggcctggtaacgacctacattttt |
27827839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 27845227 - 27845306
Alignment:
| Q |
94 |
gaattataaacgaattcgtgcacaataagccgatgctctggatgaaaacaatgaaggaagcattgctgtgtgcacgaaaat |
174 |
Q |
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| T |
27845227 |
gaattataaatgaatatgtgcacaataagtcgatgctctgaat-aaaacaatgaaggaagcattgttgtgtgcacgaaaat |
27845306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 27845468 - 27845515
Alignment:
| Q |
404 |
ataggcaacaatttagagtctctgatttgcttatactatagtgatttc |
451 |
Q |
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| T |
27845468 |
ataggcaacaatttaaagtctctgctttgcttatactatagtgatttc |
27845515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 6e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 442 - 681
Target Start/End: Original strand, 20082086 - 20082326
Alignment:
| Q |
442 |
tagtgatttctaaaataaaatagggaaaatgttacttatattctttttctgattcttgattcatgaattctcattgattcgtgttctttcatctatcctt |
541 |
Q |
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| T |
20082086 |
tagtggtttctaaaattaaatagggaaaatgttatttatattctttttctgattcttgattcatgaattctcatttattcgtgttctttcatctatcctt |
20082185 |
T |
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| Q |
542 |
gcttttatctctgattgagatcatannnnnnnnnnnnnnnnnnnnccttctacctttcttcctactcacg-aactgttttctgttatattcatcatcatt |
640 |
Q |
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| T |
20082186 |
gcttttatctctgattgagatcatattttgctttttgacttttttccttctacctttcttcctactcacgtaactgttttctgttatattcaccatcatt |
20082285 |
T |
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| Q |
641 |
tccgagagttctgcaaagagtgttaatcgtggattcacaaa |
681 |
Q |
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| T |
20082286 |
tccgagagttctccaaagagtgttaatggtggattcacaaa |
20082326 |
T |
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