View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1855_low_10 (Length: 319)
Name: NF1855_low_10
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1855_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 42355177 - 42355466
Alignment:
| Q |
18 |
taatgagttcaaaccaaccatattgttggggaagtagtagccatatagaaatgggtgtgccacaacctatgtttaaggatgctcagtacttagaaatcag |
117 |
Q |
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| T |
42355177 |
taatgagttcaaatcaaccatattgttggggaagtagtagccatatagaaatgggtgtgccacaacctatgtttaaggatgctcagtacttagaaatcag |
42355276 |
T |
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| Q |
118 |
tgccggcgattatcatgtttgtggattgaggaaacctttgacaggaagacacaggaacttttcttttgttgattgttggggatacaatatgacaaagaac |
217 |
Q |
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| T |
42355277 |
tgccggcgattatcatgtttgtggattgaggaaaccattgacaggaagacacaggaacttttcttttgttgattgttggggatacaatatgacaaagaac |
42355376 |
T |
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| Q |
218 |
tatgtgtttgatggacagattcaatcgatttcggcaggttctgagttcaactgtggacttttttcgcagaatcggacggtattttcttgg |
307 |
Q |
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| T |
42355377 |
tatgtgtttgatggacagattcaatcgatttcggcaggttctgagttcaactgtggacttttttcgcagaatcggacggtattttgttgg |
42355466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 25374390 - 25374260
Alignment:
| Q |
25 |
ttcaaaccaaccatattgttggggaagtagtagccatatagaaatgggtgtgccacaacctatgtttaaggatgctcagtacttagaaatcagtgccggc |
124 |
Q |
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| T |
25374390 |
ttcaaatcaaccttattgttggggtaatagtaattacattgaaatgggtgtgcctcaacctatgattaaagaagctcggtacctagaaattagtgccggg |
25374291 |
T |
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| Q |
125 |
gattatcatgtttgtggattgaggaaacctt |
155 |
Q |
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| T |
25374290 |
gattaccatgtatgtggagtgagaaaacctt |
25374260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 25374247 - 25374150
Alignment:
| Q |
177 |
tttcttttgttgattgttggggatacaatatgacaaagaactatgtgtttgatggacagattcaatcgatttcggcaggttctgagttcaactgtgga |
274 |
Q |
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||||||| |||||||||||||| || || ||||| || | || |||||||||||| | |||| |||||||| || |||||||| || ||||||||| |
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| T |
25374247 |
tttctttagttgattgttggggctataacatgaccaaaagttacgtgtttgatggaatggttcattcgatttcagccggttctgaatttaactgtgga |
25374150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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