View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1855_low_13 (Length: 246)
Name: NF1855_low_13
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1855_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 6111231 - 6111019
Alignment:
| Q |
16 |
ctgtgattaatagacttcattcaacacaagatcaaggtaaatgaaaaccaannnnnnnnactaatatttggcttctatacacctatactatgcatattca |
115 |
Q |
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| T |
6111231 |
ctgtgattaatagagtttattcaacacaagatcaaggtaaatgagttcca--cttttttactaatatttggcttccatacatctatactatacatattca |
6111134 |
T |
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| Q |
116 |
gctcatgaattaagtagtatagcatacaatagaaagttattaaagaacttgttaaagtaagtcaattagatatatattagtgaactagcaaaacgcaaga |
215 |
Q |
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| T |
6111133 |
gctcatgaattaagtagtatagcatacaatagaaatttcttaaagaacttgttaaagtaagtcaattagatatatattagtgaactagcaaaacgcaaga |
6111034 |
T |
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| Q |
216 |
aaccattgtgctatc |
230 |
Q |
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|||||| |||||||| |
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| T |
6111033 |
aaccatagtgctatc |
6111019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 6249475 - 6249386
Alignment:
| Q |
75 |
actaatatttggcttctatacacctatactatgcatattcagctcatgaattaagtag--tatagcatacaatagaaagttattaaagaa |
162 |
Q |
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| T |
6249475 |
actaatatttgacttctaaacaactttactatgcatattcagctcatgaattaacttgcatatatcatacaataaaaagttattaaagaa |
6249386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 6183332 - 6183291
Alignment:
| Q |
17 |
tgtgattaatagacttcattcaacacaagatcaaggtaaatg |
58 |
Q |
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| T |
6183332 |
tgtgattaatagactttattcaacacaatatcaaggtaaatg |
6183291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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