View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1855_low_14 (Length: 237)

Name: NF1855_low_14
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1855_low_14
NF1855_low_14
[»] chr4 (4 HSPs)
chr4 (136-227)||(12105373-12105464)
chr4 (150-224)||(46644132-46644206)
chr4 (141-227)||(32179262-32179343)
chr4 (140-198)||(1494015-1494073)
[»] chr3 (2 HSPs)
chr3 (143-227)||(1326452-1326536)
chr3 (76-140)||(33709572-33709637)
[»] chr2 (3 HSPs)
chr2 (141-227)||(5568358-5568446)
chr2 (139-227)||(6408325-6408415)
chr2 (141-198)||(27008466-27008523)
[»] chr7 (4 HSPs)
chr7 (71-142)||(1829921-1829992)
chr7 (139-200)||(12489525-12489586)
chr7 (71-135)||(1840398-1840462)
chr7 (73-125)||(24870113-24870165)
[»] chr5 (3 HSPs)
chr5 (140-227)||(18598932-18599018)
chr5 (72-140)||(29006218-29006284)
chr5 (141-198)||(22362729-22362786)
[»] chr6 (1 HSPs)
chr6 (140-227)||(23267272-23267357)
[»] chr1 (3 HSPs)
chr1 (178-227)||(9380062-9380111)
chr1 (138-200)||(45883891-45883954)
chr1 (138-198)||(29321936-29321996)
[»] scaffold0421 (1 HSPs)
scaffold0421 (143-187)||(13270-13314)
[»] chr8 (1 HSPs)
chr8 (140-200)||(40499433-40499494)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 12105464 - 12105373
Alignment:
Q  136 aaaaaggaaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtggcaatggacattttagaaatttcatctcac 227  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  12105464 aaaaaggaaaaagatacatagaccacccttttggtacacccttttataccactgctgatgtggcaagggatattttaggaatttcatctcac 12105373  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 46644132 - 46644206
Alignment:
Q  150 tacatggaccactcttttggtacacccttttgtaccactgctgatgtggcaatggacattttagaaatttcatct 224  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  46644132 tacatagaccactcttttggtacacccttttgtaccactggtgatgtggcaagggacattttaggaatttcatct 46644206  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 32179343 - 32179262
Alignment:
Q  141 ggaaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtggcaatggacattttagaaatttcatctcac 227  Q
    |||||||||||||| ||||||||     |||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  32179343 ggaaaaagatacatagaccactc-----gtacacccctttgtaccactgctgatgtggcaagggatattttaggaatttcatctcac 32179262  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 1494073 - 1494015
Alignment:
Q  140 aggaaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtgg 198  Q
    ||||||||||||||   ||||||||||   |||||||||||||||||||| ||||||||    
T  1494073 aggaaaaagatacacaaaccactctttctatacacccttttgtaccactgatgatgtgg 1494015  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 1326536 - 1326452
Alignment:
Q  143 aaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtggcaatggacattttagaaatttcatctcac 227  Q
    ||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  1326536 aaaaaaatacatagaccacccttttggtacactcttttgtaccactgctgatgtggcaagggacattttaggaatttcatctcac 1326452  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 33709572 - 33709637
Alignment:
Q  76 tgagagtaatatccaaaata-taaattatgaaagttgcaatgattaaaagagaccttttagaaaaa 140  Q
    |||||| ||| ||||||||| || |||  ||||||||||||| ||||||||||||||||| |||||    
T  33709572 tgagagaaatttccaaaataatatatttggaaagttgcaatggttaaaagagaccttttataaaaa 33709637  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 5568446 - 5568358
Alignment:
Q  141 ggaaaaagatacatggaccactct--tttggtacacccttttgtaccactgctgatgtggcaatggacattttagaaatttcatctcac 227  Q
    ||||||||||||||| ||||||||  |||  ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5568446 ggaaaaagatacatgtaccactctcttttaatacacccctttgtaccactgctgatgtggcaagggacattttagaaatttcatctcac 5568358  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 6408415 - 6408325
Alignment:
Q  139 aaggaaaaagatacatggaccactcttttggta--cacccttttgtaccactgctgatgtggcaatggacattttagaaatttcatctcac 227  Q
    |||||||| |||| || ||| ||||||||||||  ||||| |||||||||||||| ||||||||| ||| ||||||| |||||||||||||    
T  6408415 aaggaaaatgataaatagacaactcttttggtatacacccctttgtaccactgctcatgtggcaagggatattttaggaatttcatctcac 6408325  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 27008523 - 27008466
Alignment:
Q  141 ggaaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtgg 198  Q
    |||||||||||||   ||||||||||   |||||||||||||||||||| ||||||||    
T  27008523 ggaaaaagatacacaaaccactctttctatacacccttttgtaccactgatgatgtgg 27008466  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 1829992 - 1829921
Alignment:
Q  71 aattgtgagagtaatatccaaaatataaattatgaaagttgcaatgattaaaagagaccttttagaaaaagg 142  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  1829992 aattgtgagaataatatccaaaatataaattatgaaagttgcaatggttaaaagagacctgttagtaaaagg 1829921  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 12489525 - 12489586
Alignment:
Q  139 aaggaaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtggca 200  Q
    |||||||||||||||| ||||||| ||    ||||||| |||||||||||||||||||||||    
T  12489525 aaggaaaaagatacatagaccacttttaatatacacccctttgtaccactgctgatgtggca 12489586  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 1840398 - 1840462
Alignment:
Q  71 aattgtgagagtaatatccaaaatataaattatgaaagttgcaatgattaaaagagaccttttag 135  Q
    ||||||||||||||| |  ||||||||||||   |||||||||||| |||| |||||||||||||    
T  1840398 aattgtgagagtaatttttaaaatataaatttgaaaagttgcaatggttaagagagaccttttag 1840462  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 24870113 - 24870165
Alignment:
Q  73 ttgtgagagtaatatccaaaatataaattatgaaagttgcaatgattaaaaga 125  Q
    |||||||||||| || |||||||||||||  |||||||| |||| ||||||||    
T  24870113 ttgtgagagtaagattcaaaatataaatttggaaagttgtaatggttaaaaga 24870165  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 18598932 - 18599018
Alignment:
Q  140 aggaaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtggcaatggacattttagaaatttcatctcac 227  Q
    |||||| |||||||| ||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||  |||| ||||||||    
T  18598932 aggaaatagatacatagaccactcttttggtacaccc-tttgtaccactgttgatgtggtaagggacattttaagaattacatctcac 18599018  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 29006218 - 29006284
Alignment:
Q  72 attgtgagagtaatatccaaaatataaattatgaaagttgcaatgattaaaagagaccttttagaaaaa 140  Q
    |||||||||| ||| |||||||||||| | |  ||||||||||| ||||||||||| ||||||||||||    
T  29006218 attgtgagagaaatttccaaaatataattga--aaagttgcaataattaaaagagatcttttagaaaaa 29006284  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 22362729 - 22362786
Alignment:
Q  141 ggaaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtgg 198  Q
    |||||||||||||| |||||||||||   |||||| ||||||||||||  ||||||||    
T  22362729 ggaaaaagatacatagaccactctttctatacaccattttgtaccactaatgatgtgg 22362786  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 23267272 - 23267357
Alignment:
Q  140 aggaaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtggcaatggacattttagaaatttcatctcac 227  Q
    ||||||||||||||| |||||||||||||||| |||| |||||| ||||  ||||||||||| |||||||||||  ||||||||||||    
T  23267272 aggaaaaagatacatagaccactcttttggtagaccc-tttgta-cactattgatgtggcaagggacattttagggatttcatctcac 23267357  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 9380111 - 9380062
Alignment:
Q  178 tttgtaccactgctgatgtggcaatggacattttagaaatttcatctcac 227  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  9380111 tttgtaccactgctgatgtggcaagggacattttagggatttcatctcac 9380062  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 45883954 - 45883891
Alignment:
Q  138 aaaggaaaaagatacatggaccactcttttgg-tacacccttttgtaccactgctgatgtggca 200  Q
    ||||| ||||||||  | |||||||||||||| ||||||||||  |||||||||||||||||||    
T  45883954 aaagggaaaagataggtagaccactcttttggatacaccctttcataccactgctgatgtggca 45883891  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 29321936 - 29321996
Alignment:
Q  138 aaaggaaaaagatacatggaccactcttttggtacacccttttgtaccactgctgatgtgg 198  Q
    ||||||||||||||||   ||||||||||   ||||||| ||| |||||||||||||||||    
T  29321936 aaaggaaaaagatacacaaaccactctttctatacacccctttctaccactgctgatgtgg 29321996  T

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Target: scaffold0421 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 13270 - 13314
Alignment:
Q  143 aaaaagatacatggaccactcttttggtacacccttttgtaccac 187  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||    
T  13270 aaaaagattcatgtaccactcttttggtacacccttttctaccac 13314  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 40499433 - 40499494
Alignment:
Q  140 aggaaaaagatacatggaccactctttt-ggtacacccttttgtaccactgctgatgtggca 200  Q
    ||||||||||||||| ||||||||||||   ||| ||| |||| ||||||||||||||||||    
T  40499433 aggaaaaagatacatagaccactcttttctatacgcccctttgcaccactgctgatgtggca 40499494  T

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