View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1855_low_15 (Length: 231)
Name: NF1855_low_15
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1855_low_15 |
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| [»] scaffold0432 (2 HSPs) |
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Alignment Details
Target: scaffold0432 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 6119 - 6008
Alignment:
| Q |
34 |
aaggtgtgcagtgtccgaagtggaccacatgctaaaccaaaaaattaaacaatcagaaacgtaagatattaatttaaaactaatggacttagctagctct |
133 |
Q |
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| T |
6119 |
aaggtgtgcaatgtccgaagtggacga---gctaaaccaaaaaattaaacaatcagaaacgtaagatattaatttaaaactaatggacttagctagctct |
6023 |
T |
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| Q |
134 |
taattaaaaaagtta |
148 |
Q |
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| T |
6022 |
taattaaaaaagtta |
6008 |
T |
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Target: scaffold0432; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 6021 - 5965
Alignment:
| Q |
161 |
aattaaaaaagttatgacaattgttattctataagattgcatgttaattgcatttat |
217 |
Q |
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| T |
6021 |
aattaaaaaagttatgacaattgttattctataagattgcatgttaacttcatttat |
5965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 9826727 - 9826643
Alignment:
| Q |
64 |
gctaaaccaaaaaattaaacaatcagaaacgtaagatattaatttaaaactaatggacttagctagctcttaattaaaaaagtta |
148 |
Q |
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| T |
9826727 |
gctaaaccaaaaaattcaacaaccagaaacttaggatattaatttaaaactaatggacttagctagctcttaattaaaaaagtta |
9826643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 9812309 - 9812245
Alignment:
| Q |
84 |
aatcagaaacgtaagatattaatttaaaactaatggacttagctagctcttaattaaaaaagtta |
148 |
Q |
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| T |
9812309 |
aatcagaaacgtaagatattaattttaaactaatggacttagttagctcttaattaaaaaagtta |
9812245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 9751706 - 9751625
Alignment:
| Q |
67 |
aaaccaaaaaattaaacaatcagaaacgtaagatattaatttaaaactaatggacttagctagctcttaattaaaaaagtta |
148 |
Q |
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| T |
9751706 |
aaaccaaaaaatccaacaatcagaaacttggcatattaatttaaaactaatggacttggctagctcttaattaaaaaagtta |
9751625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 9812258 - 9812202
Alignment:
| Q |
161 |
aattaaaaaagttatgacaattgttattctataagattgcatgttaattgcatttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
9812258 |
aattaaaaaagttatgacaattgttattctataatattgcatgttaatttcatttat |
9812202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 9751638 - 9751590
Alignment:
| Q |
161 |
aattaaaaaagttatgacaattgttattctataagattgcatgttaatt |
209 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
9751638 |
aattaaaaaagttatgacaattgttattctttaagattgaatgttaatt |
9751590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 9826656 - 9826608
Alignment:
| Q |
161 |
aattaaaaaagttatgacaattgttattctataagattgcatgttaatt |
209 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
9826656 |
aattaaaaaagttatgacgattgttattctttaagattgcatgttaatt |
9826608 |
T |
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