View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1855_low_3 (Length: 475)
Name: NF1855_low_3
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1855_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Complemental strand, 37975683 - 37975235
Alignment:
| Q |
11 |
cacagatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatgatatggt |
110 |
Q |
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| T |
37975683 |
cacagatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatggtatggt |
37975584 |
T |
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| Q |
111 |
ttatagcttagattagattctgtgatttattaggcacattacaaagttgacnnnnnnnnnnnnnnnnnnnnnntagggactggtggaataattggtgctt |
210 |
Q |
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| T |
37975583 |
ttatggcttagattagattctgtgatttattaggcacattacaaagttgacaaaagaaaagaaaaaagaagaatagggactggtggaataattggtgctt |
37975484 |
T |
|
| Q |
211 |
aagttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatgttactatgtttttgttagttagtgaaaat |
310 |
Q |
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| T |
37975483 |
aagttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatgttactatgtttttgttagttagtgaaaat |
37975384 |
T |
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| Q |
311 |
gaaacataacattgtgtttagggaatctatattggttgaataaagagttggaatccactcaaaattaagcagtagatgtttgatgggaagaataataaca |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37975383 |
gaaacataacattgtgtttagggaatctatattggttgaataaagagttggaatccactcaaaattaagtagtagatgtttgatgggaagaataataaca |
37975284 |
T |
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| Q |
411 |
tagatatttggaatagagacattaacatgactccatccaacctttgaca |
459 |
Q |
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| T |
37975283 |
tagatatttggaatagagacattaacatgactccatccaacctttgaca |
37975235 |
T |
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