View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1855_low_4 (Length: 434)
Name: NF1855_low_4
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1855_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18196724 - 18196942
Alignment:
| Q |
1 |
gttgaaaaaggaggtgacatggatgaaaaagggtaggcagaagagaacaacaatatatctttacaattaagtgtatgaatccatctgcacaataagatct |
100 |
Q |
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| T |
18196724 |
gttgaaaaaggaggtgacatggatgagaaagggtaggcagaagagaacaacactat--ctttacaattaagtgtgtgaatccatctgcacactaagatct |
18196821 |
T |
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| Q |
101 |
cacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaacatcttcacagaaacac |
200 |
Q |
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| T |
18196822 |
cacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaacttcttcacagaaacac |
18196921 |
T |
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| Q |
201 |
ataagccattgtacctcccta |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
18196922 |
ataaaccattgtacctcccta |
18196942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 257 - 416
Target Start/End: Original strand, 18196978 - 18197137
Alignment:
| Q |
257 |
actatcaggtaaacagaacaaagaaacaatagcaacaacaaaaacttattctacagatatacctgagatgattaataattcaaccataacgctttttggg |
356 |
Q |
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| T |
18196978 |
actatcaggtaaacagaacaaagaaacaatagcaacaacaaaaacttattctacagatatacccgagatgattaataattcaaccataacgctttttggg |
18197077 |
T |
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| Q |
357 |
agaacgattttactaacacacaacatcgatgtatctaccaatgattcttcctcagagtca |
416 |
Q |
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| T |
18197078 |
agaacgatttttataacacacaacatcgatgtatctaccaatgattcttcctcagagtca |
18197137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18192190 - 18192407
Alignment:
| Q |
1 |
gttgaaaaaggaggtgacatggatgaaaaagggtagg-cagaagagaacaacaatatatctttacaattaagtgtatgaatccatctgcacaataagatc |
99 |
Q |
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| T |
18192190 |
gttgaaaaaggaggtgacatggatgaaaaagggtaggacagaaaagaaaaacactat--ctttacaattacgtgggtgaatccagctgcacactaagatc |
18192287 |
T |
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| Q |
100 |
tcacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaacatcttcacagaaaca |
199 |
Q |
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| T |
18192288 |
tcacag-ccacagcaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaacttcttcacataaaca |
18192386 |
T |
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| Q |
200 |
cataagccattgtacctccct |
220 |
Q |
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| T |
18192387 |
cataaaccatagtacctccct |
18192407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 18187249 - 18187396
Alignment:
| Q |
76 |
tgaatccatctgcacaataagatctcacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgct---ttccaactttttga |
172 |
Q |
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|||||||| ||| ||| |||||||||| |||||| || ||||||||||||||||||||| | ||||||||||||||| | ||| ||| |||||||||| |
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| T |
18187249 |
tgaatccagctgaacactaagatctcataggccaaaacaatttgtggctcacaaaactttcccttttctgatgtggcttggctttcttctaactttttga |
18187348 |
T |
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| Q |
173 |
cctttataaaacatcttcacagaaacacataagccattgtacctccct |
220 |
Q |
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| T |
18187349 |
cctatataaaacctcttcacataaacacataaaccattgtacctccct |
18187396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 289 - 412
Target Start/End: Original strand, 18187456 - 18187579
Alignment:
| Q |
289 |
caacaacaaaaacttattctacagatatacctgagatgattaataattcaaccataacgctttttgggagaacgattttactaacacacaacatcgatgt |
388 |
Q |
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||||||||||||||| ||| ||| ||||||||||||||| |||| |||||||||| | |||||| |||||||| ||||| | || |||||||| |||||| |
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| T |
18187456 |
caacaacaaaaacttcttcaacatatatacctgagatgactaatgattcaaccatgaagcttttcgggagaaccatttttcaaaaacacaacaccgatgt |
18187555 |
T |
|
| Q |
389 |
atctaccaatgattcttcctcaga |
412 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
18187556 |
tcctaccaatgattcttcctcaga |
18187579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 414
Target Start/End: Original strand, 18229104 - 18229202
Alignment:
| Q |
316 |
tacctgagatgattaataattcaaccataacgctttttgggagaacgattttactaacacacaacatcgatgtatctaccaatgattcttcctcagagt |
414 |
Q |
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| T |
18229104 |
tacctgagatgactaatgattcaaccataaagcttttcgggagaaccatttttcaaacacacaacaccgatgttactaccaatgatttttcctcagagt |
18229202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 18192458 - 18192551
Alignment:
| Q |
290 |
aacaacaaaaacttattctacagatatacctgaga--tgattaataattcaaccataacgctttttgggagaacgattttactaacacacaaca |
381 |
Q |
| |
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|||||||||||||| ||| ||| ||||||| |||| ||| |||| |||||||||||| |||||| |||||||| ||||| | ||||| ||||| |
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| T |
18192458 |
aacaacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaacaatttttcaaacacgcaaca |
18192551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 18228912 - 18228999
Alignment:
| Q |
97 |
atctcacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaacatcttc |
190 |
Q |
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| T |
18228912 |
atctcataggcca-aaaaatttgtggctcacaaaactttcccttttcgtatgtg-----gctttctaactttttgacctttatgaaacctcttc |
18228999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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