View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1855_low_5 (Length: 405)
Name: NF1855_low_5
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1855_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 8287674 - 8288065
Alignment:
| Q |
1 |
aaagattccttagtcccttagtgagttgtaaccaatttgttcattctcttatatttatacatttcccatgtgaacacaagactgcataactctgattcaa |
100 |
Q |
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| T |
8287674 |
aaagattccttagtcctttagtgagctgtaaccaatttcttcattctcttatatttatacatttcccatgtgaacacaagattgcataactctgattcaa |
8287773 |
T |
|
| Q |
101 |
gacatttaaggacttttgtttatttggctctcat--gcgtgtaatgacagtcgaagatcagccacaactatgtggatcaacatccttaggcatgggtgga |
198 |
Q |
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| T |
8287774 |
gacatttagggacttttgtttatttggctctcatatgcgtgcaatgacagtcgaagatcagtcacaactatgtggatcgacatccttaggcatgggtgga |
8287873 |
T |
|
| Q |
199 |
ttcggtaaatcatcgagaaggtacgcttttctggagtctccgaaaaccatctttaatttgtctgtaaatttcttttagtttatgttgttatctttgtttc |
298 |
Q |
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||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8287874 |
ttcggtaaaacatcgaggaggtacgcttttctggagtttccggaaaccatctttaatttgtctgtaattttcttttagtttatgttgttatctttgtttc |
8287973 |
T |
|
| Q |
299 |
taggaacacacaaagcaccatttctacatgttgttttttcatttcaggatccattacttgcgacagggcgaatgcaaatatgtgaggttttt |
390 |
Q |
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| T |
8287974 |
taggaacacacaaagcaccatttctacatgttgttttttcatttcaggatccattacttgcgacagggcgaatgcaaatatgtgaggttttt |
8288065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 8269518 - 8269584
Alignment:
| Q |
141 |
aatgacagtcgaagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
207 |
Q |
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| T |
8269518 |
aatgacggttgaagatcggccacaactatgtggaacaacatccttggggatgggcggattcggtaaa |
8269584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 37646590 - 37646665
Alignment:
| Q |
234 |
gtctccgaaaaccatctttaatttgtctgtaaatttcttttagtttatgttgttatctttgtttctaggaacacac |
309 |
Q |
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||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37646590 |
gtctccggaaaccatctttaatttgtctataattttcttttagtttatgttgttatctttgtttgcaggaacacac |
37646665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 37647478 - 37647542
Alignment:
| Q |
327 |
tgttgttttttcatttcaggatccattacttgcgacagggcgaatgcaaatatgtgaggtttttg |
391 |
Q |
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| T |
37647478 |
tgttgttttttcatttcaggttccattacttgcggcagggctaatgcaaatatgtgaggtttttg |
37647542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 1250767 - 1250825
Alignment:
| Q |
149 |
tcgaagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
207 |
Q |
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||||||||| |||||||||||||||| |||||||||| || |||||||||||||||||| |
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| T |
1250767 |
tcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaa |
1250825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 26585307 - 26585362
Alignment:
| Q |
152 |
aagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
207 |
Q |
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|||||| |||||||||||||||| ||||| |||| || |||||||||||||||||| |
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| T |
26585307 |
aagatcggccacaactatgtggagcaacaaccttgggaatgggtggattcggtaaa |
26585362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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