View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1855_low_6 (Length: 370)
Name: NF1855_low_6
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1855_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 31938535 - 31938165
Alignment:
| Q |
1 |
tttttatgtcaggcctcgcctttgttttgcagctttatatgttaattagaaaatcatggccttagcttgtatgcatttttgtgcatcatatcacaagttt |
100 |
Q |
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| T |
31938535 |
tttttatgtcaggcctcgcctttgtattgcagctttatatgttaattagaaaatcatggccttagcttgtatgcatttttgtgcatcatatcacaagttt |
31938436 |
T |
|
| Q |
101 |
tgctaagtggtggattttctttaaaagaacattttcattaacagaagataatgatggcatgctttgcattaacaggctgaattgctatagagtttaaaat |
200 |
Q |
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| T |
31938435 |
tgctaagtggtggattttctttaaaagaacattttcattaacagaagataatgatggcatgctttgcattaacaggctgaattgc--tagagtttaaaat |
31938338 |
T |
|
| Q |
201 |
taaggtttaagtgtgcagaaattcatcttgcaattgataaaattttgtggttgtgttgattagtgtg--ttctttggatcaataacatgattttcgcttg |
298 |
Q |
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| T |
31938337 |
tcaagtttaagtgtgcagaaattcatcttgcaattgataaaattttgtggttgtgttgattagtgtgaattctttggatcaataacatgattttcgcttg |
31938238 |
T |
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| Q |
299 |
gtctttg--------ggtaccagattagtctgttagtaggaatggtttctaattcgaactggttcctatgctt |
363 |
Q |
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| T |
31938237 |
gtctttggtgagaaaggtaccagattagtctgttagtaggaatggtttctaattcgaactggttcctatgctt |
31938165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 302
Target Start/End: Complemental strand, 5638537 - 5638397
Alignment:
| Q |
163 |
tttgcattaacaggctgaattgctatagagtttaaaattaaggtttaagtgtgcagaaattcatcttgcaattgataaaattttgtggttgtgttgatta |
262 |
Q |
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| T |
5638537 |
tttgctttaacaagttgagttgctgcagagtttaaaattcaggtttaagtcaaga-aaatatatcttgcaattgatataattttgtggctgtcttgttta |
5638439 |
T |
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| Q |
263 |
gtgtg--ttctttggatcaataacatgattttcgcttggtct |
302 |
Q |
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| T |
5638438 |
gtgtgaattctttggattattagcattattttcgcttggtct |
5638397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 445773 - 445808
Alignment:
| Q |
328 |
aggaatggtttctaattcgaactggttcctatgctt |
363 |
Q |
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| T |
445773 |
aggaatggtttctaattcaaactggttcctatgctt |
445808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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