View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1855_low_7 (Length: 347)
Name: NF1855_low_7
Description: NF1855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1855_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 329
Target Start/End: Original strand, 17904978 - 17905298
Alignment:
| Q |
6 |
atcatcattttcctcgttataaatcatactaggcttaatgggataaaacattggtaaggaaaaatagtgtagggcacagtaatgatcaacaatagcataa |
105 |
Q |
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| T |
17904978 |
atcatcattttcctcgttataaatcatactaggcttaatgggataaaacattggtaaggaaaaatagtgtagggcacaataatgatcaacaatagcataa |
17905077 |
T |
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| Q |
106 |
tcaaccaaatctatattcatgaaggtcaattttattcctnnnnnnnctacccttaacgagattaggaatctcttccaaccaatgtttgccattgatacga |
205 |
Q |
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| T |
17905078 |
tcaaccaaatctatattcatgaaggtcaagtttattcctaaaaaaactacccttaacgagattaggaatctcttccaaccaatgtttgtcattgatacga |
17905177 |
T |
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| Q |
206 |
agacccattgatacaacttcatacaattaagtcatttattctttaactatcaatgtttaatattgtgagaatgaaaagccaaattgactagttgtgaacc |
305 |
Q |
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| T |
17905178 |
agacccatagatacaacttcattcagttaagtcatttattttgtaactaccaatgtttaatat--tgacaatgaaaagccaaattgactagttgtgaacc |
17905275 |
T |
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| Q |
306 |
attaacaatccacatataacgatt |
329 |
Q |
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| T |
17905276 |
atttacaatcc-tatataacgatt |
17905298 |
T |
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