View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18560_low_1 (Length: 585)

Name: NF18560_low_1
Description: NF18560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18560_low_1
NF18560_low_1
[»] chr3 (22 HSPs)
chr3 (250-567)||(26403211-26403527)
chr3 (102-219)||(26403558-26403679)
chr3 (14-103)||(43207452-43207542)
chr3 (14-101)||(53507096-53507183)
chr3 (27-101)||(50939459-50939534)
chr3 (26-102)||(44708281-44708358)
chr3 (26-101)||(34290864-34290940)
chr3 (26-101)||(48156942-48157018)
chr3 (36-102)||(48720530-48720596)
chr3 (330-435)||(26395415-26395520)
chr3 (27-84)||(54407382-54407439)
chr3 (412-496)||(26402493-26402577)
chr3 (36-102)||(9878919-9878986)
chr3 (35-92)||(47467591-47467648)
chr3 (35-86)||(50258733-50258784)
chr3 (37-87)||(36605861-36605911)
chr3 (37-86)||(27078819-27078868)
chr3 (37-86)||(27084616-27084665)
chr3 (37-86)||(36716276-36716325)
chr3 (37-86)||(38681348-38681397)
chr3 (37-86)||(54619454-54619503)
chr3 (50-86)||(3954866-3954902)
[»] chr8 (10 HSPs)
chr8 (14-103)||(42600582-42600672)
chr8 (14-86)||(23606833-23606905)
chr8 (14-86)||(23798473-23798545)
chr8 (14-86)||(10917210-10917281)
chr8 (35-86)||(20003875-20003926)
chr8 (37-86)||(2952473-2952522)
chr8 (37-86)||(3048774-3048823)
chr8 (37-86)||(5860996-5861045)
chr8 (37-85)||(30883127-30883175)
chr8 (26-86)||(45472207-45472267)
[»] chr6 (13 HSPs)
chr6 (14-103)||(20711930-20712020)
chr6 (14-103)||(17353757-17353846)
chr6 (14-86)||(27788900-27788972)
chr6 (14-103)||(235437-235527)
chr6 (14-86)||(19986982-19987054)
chr6 (14-102)||(28075587-28075676)
chr6 (35-89)||(30832666-30832720)
chr6 (36-86)||(23070889-23070939)
chr6 (37-86)||(11081684-11081733)
chr6 (37-86)||(13727650-13727699)
chr6 (50-86)||(19741237-19741273)
chr6 (50-86)||(21280349-21280385)
chr6 (50-86)||(27314778-27314814)
[»] chr1 (15 HSPs)
chr1 (14-101)||(40502002-40502090)
chr1 (14-101)||(13913695-13913782)
chr1 (14-102)||(9173234-9173322)
chr1 (14-89)||(19955544-19955618)
chr1 (36-86)||(1367111-1367161)
chr1 (36-101)||(17168769-17168835)
chr1 (26-86)||(27559463-27559523)
chr1 (40-102)||(44895466-44895529)
chr1 (37-104)||(51607674-51607742)
chr1 (26-86)||(23181727-23181787)
chr1 (35-86)||(14146221-14146272)
chr1 (53-86)||(5027991-5028024)
chr1 (37-86)||(27906949-27906998)
chr1 (37-86)||(44655555-44655604)
chr1 (50-86)||(41697293-41697329)
[»] chr4 (24 HSPs)
chr4 (36-101)||(38352489-38352554)
chr4 (14-86)||(24969258-24969330)
chr4 (14-98)||(40089328-40089411)
chr4 (26-86)||(16844843-16844903)
chr4 (14-98)||(54083456-54083541)
chr4 (14-86)||(32128408-32128480)
chr4 (43-105)||(2790981-2791044)
chr4 (26-86)||(37777449-37777509)
chr4 (26-83)||(34027407-34027464)
chr4 (14-101)||(19498313-19498400)
chr4 (14-84)||(16882606-16882675)
chr4 (27-85)||(35463958-35464016)
chr4 (53-101)||(54779441-54779490)
chr4 (37-89)||(38209842-38209894)
chr4 (35-86)||(1105447-1105498)
chr4 (50-92)||(9579483-9579525)
chr4 (50-92)||(9585178-9585220)
chr4 (36-86)||(10431442-10431492)
chr4 (36-86)||(45560704-45560754)
chr4 (53-86)||(35780573-35780606)
chr4 (37-86)||(55255096-55255145)
chr4 (50-86)||(5128997-5129033)
chr4 (26-86)||(17679233-17679293)
chr4 (26-86)||(47127997-47128057)
[»] chr7 (13 HSPs)
chr7 (14-101)||(47985181-47985268)
chr7 (27-101)||(20091505-20091579)
chr7 (27-102)||(19691896-19691973)
chr7 (14-86)||(24525896-24525968)
chr7 (14-86)||(48984056-48984127)
chr7 (14-102)||(38415087-38415175)
chr7 (14-100)||(25010254-25010340)
chr7 (14-102)||(10329621-10329710)
chr7 (14-86)||(23551283-23551355)
chr7 (36-86)||(28749597-28749647)
chr7 (53-104)||(10027615-10027667)
chr7 (50-86)||(12596443-12596479)
chr7 (37-92)||(18777019-18777075)
[»] chr2 (12 HSPs)
chr2 (14-101)||(26715931-26716018)
chr2 (26-101)||(27506965-27507041)
chr2 (27-103)||(24410234-24410311)
chr2 (27-86)||(9045848-9045907)
chr2 (14-81)||(8327488-8327554)
chr2 (16-101)||(10762779-10762865)
chr2 (37-86)||(4505695-4505744)
chr2 (35-86)||(3952915-3952966)
chr2 (37-86)||(3155019-3155068)
chr2 (55-92)||(5952949-5952986)
chr2 (37-86)||(6964808-6964857)
chr2 (54-105)||(52968-53020)
[»] scaffold0039 (1 HSPs)
scaffold0039 (27-101)||(106379-106454)
[»] chr5 (13 HSPs)
chr5 (15-86)||(16199005-16199076)
chr5 (14-101)||(27923885-27923972)
chr5 (42-101)||(7670728-7670787)
chr5 (14-102)||(38869572-38869660)
chr5 (27-83)||(9364113-9364169)
chr5 (36-101)||(40389765-40389831)
chr5 (27-86)||(16799547-16799606)
chr5 (35-86)||(15480228-15480279)
chr5 (35-86)||(19523109-19523160)
chr5 (37-86)||(34756615-34756664)
chr5 (50-86)||(22987481-22987517)
chr5 (50-86)||(31881604-31881640)
chr5 (37-101)||(34855925-34855989)
[»] scaffold0027 (1 HSPs)
scaffold0027 (14-103)||(4147-4236)
[»] scaffold0070 (1 HSPs)
scaffold0070 (50-86)||(1027-1063)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 250 - 567
Target Start/End: Complemental strand, 26403527 - 26403211
Alignment:
Q  250 ttttatttccaccacacttagccctatggattaaaaattgtgattctctatgcttttttacttgccaacatactgttatattgctcacaactataagtaa 349  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  26403527 ttttatttccacctcacttagccctatggattaaaaattgtgattctctatgctttttaacttgccaacatactgttatgttgctcacaactataagtaa 26403428  T
Q  350 cataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcactaccaccattgatgcggttctt 449  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  26403427 cataagtatacagtttgagcatcttaggatccattttttgtgttgcttggtcac-aacactatcacttgtagttgcactaccaccattgatgctgttctt 26403329  T
Q  450 cttaacatgaccaagatttgatttctctatattcatgttattgttgttgttgatgatgtcctcgtcttgtggtaattcttttactccactgatgcatgcc 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26403328 cttaacatgaccaagatttgatttctctatattcatgttattgttgttgttgatgatgtccttgtcttgtggtaattcttttactccactgatgcatgcc 26403229  T
Q  550 tcttgattaccaaaggcc 567  Q
    ||||||||  ||||||||    
T  26403228 tcttgatttacaaaggcc 26403211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 26403679 - 26403558
Alignment:
Q  102 atcaggtacatagttgataaagctaataacttgaaacccgaacgactagataa----atttattttaatctttgaattaaaagtttattaaatttatgat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| ||    
T  26403679 atcaggtacatagttgataaagctaataacttgaaacccgaacgactagataattaaatttattttaatctttgaattaaaagtttattaaatttattat 26403580  T
Q  198 actagttttttcaggttttact 219  Q
    ||||||||||||||||||||||    
T  26403579 actagttttttcaggttttact 26403558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 43207452 - 43207542
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 103  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  43207452 ctagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctgat 43207542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 53507096 - 53507183
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  53507096 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 53507183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 50939459 - 50939534
Alignment:
Q  27 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctg 101  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  50939459 aaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggacgggcctg 50939534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 44708358 - 44708281
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 102  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  44708358 aaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagagccgggcctga 44708281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 34290864 - 34290940
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  34290864 aaaaaaaaaattgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctcagggtcgggcctg 34290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 48157018 - 48156942
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    ||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  48157018 aaaaataaaatttaggcccatgattgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 48156942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 48720530 - 48720596
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctga 102  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| || ||||||    
T  48720530 ttgaggcccatgactgagggaagctcagctctgttgagctgtttgcacccgtcagggccgtgcctga 48720596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 330 - 435
Target Start/End: Complemental strand, 26395520 - 26395415
Alignment:
Q  330 ttgctcacaactataagtaacataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcacta 429  Q
    |||||||||| ||||||| ||| |||||||| |||||||| |||| |||||||  |||||| ||||||| |||||||||| | || ||| || |||||||    
T  26395520 ttgctcacaaatataagttacacaagtataccgtttgagcctctttggatccaaattttgtgttgcttgatcaccaacaccaacatttgcagatgcacta 26395421  T
Q  430 ccacca 435  Q
    ||||||    
T  26395420 ccacca 26395415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 54407382 - 54407439
Alignment:
Q  27 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc 84  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54407382 aaaaaaaaattgaggcccatgactgagggaggcccaactctgttgagctgtttgcacc 54407439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 412 - 496
Target Start/End: Complemental strand, 26402577 - 26402493
Alignment:
Q  412 tcacttgtagttgcactaccaccattgatgcggttcttcttaacatgaccaagatttgatttctctatattcatgttattgttgt 496  Q
    |||| ||||||||| ||||||||||| ||| ||||||||| || || ||||||||||||||| |||||||| | |||||||||||    
T  26402577 tcacctgtagttgctctaccaccattcatgtggttcttctcaatataaccaagatttgatttttctatatttaagttattgttgt 26402493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 9878919 - 9878986
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 102  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  9878919 ttgaggcccatgattaagggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 9878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 47467648 - 47467591
Alignment:
Q  35 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcaggg 92  Q
    ||||||||||||   |||||||||| ||||||  ||||||||||||||||||||||||    
T  47467648 cttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcacccctcaggg 47467591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 50258733 - 50258784
Alignment:
Q  35 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  50258733 cttgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccc 50258784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 36605911 - 36605861
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccct 87  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccct 36605861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 27078819 - 27078868
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  27078819 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 27078868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 27084616 - 27084665
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  27084616 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 27084665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 36716276 - 36716325
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  36716276 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 36716325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 38681348 - 38681397
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  38681348 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 38681397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 54619454 - 54619503
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  54619454 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 54619503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 3954866 - 3954902
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  3954866 tgagggaggcccagctcgtttgagctgtttgcacccc 3954902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 42600672 - 42600582
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 103  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  42600672 ctagtgggtattaaaaataaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctgat 42600582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 23606833 - 23606905
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23606833 ctagtgggtattaaaagaaaatttgaggcccatgactgagggaggcccaactctgttgagctgtttgcacccc 23606905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 23798473 - 23798545
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  23798473 ctagtgggtattaaaaaaaaatttgaggcccatgactgagggaggcccagctttgttgagctgttcgcacccc 23798545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 10917281 - 10917210
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10917281 ctagtgggtattaaaaaaaaa-ttgtggcccatgagtgagggaggcccagctctgttgagctgtttgcacccc 10917210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 20003875 - 20003926
Alignment:
Q  35 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  20003875 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 20003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 2952473 - 2952522
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  2952473 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 2952522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 3048774 - 3048823
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  3048774 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3048823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 5860996 - 5861045
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  5860996 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 5861045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 30883175 - 30883127
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc 85  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||    
T  30883175 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccc 30883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 45472267 - 45472207
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||| ||| |||||||||||   || ||| |||||||||| |||||||||||||||||||    
T  45472267 aaaaaaaaaattgaggcccatccttgggggtggcccagctcggttgagctgtttgcacccc 45472207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 20711930 - 20712020
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctgat 103  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  20711930 ctagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggccgggcctgat 20712020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 17353846 - 17353757
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 103  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  17353846 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgat 17353757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 27788900 - 27788972
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27788900 ctagtgggtattaaaaaaaaatttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 27788972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 235437 - 235527
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 103  Q
    |||||||| || ||||| ||| || ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  235437 ctagtgggtattaaaaaaaaaattaaggtccatgactgagggaggcccagctctgttaagctgtttgcaccccctcagggacgggcctgat 235527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 19987054 - 19986982
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  19987054 ctagtgggtattaaaaaaaaatttgaggcccataattgagggaggcccagctctgttgagctgtttgcacccc 19986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 28075676 - 28075587
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 102  Q
    |||||||| || ||||| ||| |||| |||||||||||| ||| ||| ||||||||||||||||||||| |||||||| | |||||||||    
T  28075676 ctagtgggtattaaaaaaaaaattgaagcccatgactgaaggaagcctagctctgttgagctgtttgcaccccctcagagccgggcctga 28075587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 30832666 - 30832720
Alignment:
Q  35 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctca 89  Q
    ||||||||||||   |||||||||||||||||  |||||||||||||||||||||    
T  30832666 cttgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccctca 30832720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 23070889 - 23070939
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  23070889 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 23070939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 11081684 - 11081733
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||| || ||||||||| |||||  ||||||||||||||||||    
T  11081684 tgaggcccatgccttagggaggcctagctccattgagctgtttgcacccc 11081733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 13727650 - 13727699
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  13727650 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcacccc 13727699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 19741237 - 19741273
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  19741237 tgagggaggcccagctcgtttgagctgtttgcacccc 19741273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 21280385 - 21280349
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  21280385 tgagggaggcccagctcgtttgagctgtttgcacccc 21280349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 27314778 - 27314814
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  27314778 tgagggaggcccagctcgtttgagctgtttgcacccc 27314814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 40502002 - 40502090
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  40502002 ctagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 40502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 13913695 - 13913782
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  13913695 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 13913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 9173234 - 9173322
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 102  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||    
T  9173234 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggccgggcctga 9173322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 19955618 - 19955544
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctca 89  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19955618 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcacccctca 19955544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 1367111 - 1367161
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1367111 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 1367161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 17168835 - 17168769
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  17168835 ttgaggcccatgactgagggaggccaagctctattgagctgtttgcatcccctcagggtcgggcctg 17168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 27559523 - 27559463
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27559523 aaaaaaaaaattgaggcccatgactgagggaggtccagctctgttgagctgtttgcacccc 27559463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 44895529 - 44895466
Alignment:
Q  40 ggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  44895529 ggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgagcctga 44895466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 51607674 - 51607742
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctgatc 104  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| |  |||||||||||    
T  51607674 tgaggcccatgattgaggaaggcccagctctattgagctgtttgcaccacctcatgaccgggcctgatc 51607742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 23181787 - 23181727
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||| ||| ||||||||||| | || ||| |||||||||| |||||||||||||||||||    
T  23181787 aaaaaaaaatttgaggcccatcattgggggtggcccagctcggttgagctgtttgcacccc 23181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 14146272 - 14146221
Alignment:
Q  35 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  14146272 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 14146221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 5027991 - 5028024
Alignment:
Q  53 gggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||| |||||||||||||||||||    
T  5027991 gggaggcccagctcggttgagctgtttgcacccc 5028024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 27906949 - 27906998
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 27906998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 44655604 - 44655555
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  44655604 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 44655555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 41697293 - 41697329
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41697293 tgagggaggcccagctcgtttgagctgtttgcacccc 41697329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 38352489 - 38352554
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38352489 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcacccctcagggccgggcctg 38352554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 24969330 - 24969258
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24969330 ctagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 24969258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 40089411 - 40089328
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggc 98  Q
    |||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  40089411 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcatggccgggc 40089328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 16844903 - 16844843
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16844903 aaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 16844843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 54083456 - 54083541
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggc 98  Q
    |||||||| || ||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |||||    
T  54083456 ctagtgggtattaaaaaaaaaattgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctcagggacgggc 54083541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 32128480 - 32128408
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  32128480 ctagtgggtattaaaaaaaaaattgaggtccataactgagggaggcccagctctgttgagctgtttgcacccc 32128408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 2790981 - 2791044
Alignment:
Q  43 ccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgatca 105  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  2790981 ccatgactgagggagacccagctctgttgagctgtttgcaccccctcagagtcgggcctgatca 2791044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 37777449 - 37777509
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  37777449 aaaaaaaaaattgaggcccatgattgagggaggtccagctctgttgagctgtttgcacccc 37777509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 34027464 - 34027407
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 83  Q
    ||||| ||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  34027464 aaaaaaaaaattgaggcccatgactgagggagacccagctctgttgagcagtttgcac 34027407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 19498400 - 19498313
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc-tcagggtcgggcctg 101  Q
    |||||||| || ||||| ||| ||||||||||||| || |||||||||||| |||||||||| |||||||||| |||||| ||||||||    
T  19498400 ctagtgggtattaaaaaaaaa-ttgaggcccatgattgggggaggcccagcactgttgagctatttgcaccccgtcagggccgggcctg 19498313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 16882606 - 16882675
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc 84  Q
    |||||||| || ||||| ||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  16882606 ctagtgggtattaaaaaaaaa-ttgaggctcatgactaagggaagcccagctctgttgagctgtttgcacc 16882675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 35464016 - 35463958
Alignment:
Q  27 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc 85  Q
    |||| ||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  35464016 aaaaaaaaattgatgcccatggctgggggaggcccagctctgttgagctgtttgcaccc 35463958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 54779490 - 54779441
Alignment:
Q  53 gggaggcccagctctgttgagctgtttgcac-ccctcagggtcgggcctg 101  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  54779490 gggaggcccagctcggttgagctgtttgcactccctcagggccgggcctg 54779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 38209842 - 38209894
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctca 89  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||    
T  38209842 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccctca 38209894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 1105498 - 1105447
Alignment:
Q  35 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  1105498 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 1105447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 9579483 - 9579525
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccctcaggg 92  Q
    |||||||||||||||||  ||||||||||||||| ||||||||    
T  9579483 tgagggaggcccagctcgtttgagctgtttgcacgcctcaggg 9579525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 9585178 - 9585220
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccctcaggg 92  Q
    |||||||||||||||||  ||||||||||||||| ||||||||    
T  9585178 tgagggaggcccagctcgtttgagctgtttgcacgcctcaggg 9585220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 10431442 - 10431492
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  10431442 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 10431492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 45560704 - 45560754
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  45560704 ttgaggcccatctttgagggaggcccagctcgtttgagctgtttgcacccc 45560754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 35780573 - 35780606
Alignment:
Q  53 gggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||| |||||||||||||||||||    
T  35780573 gggaggcccagctcggttgagctgtttgcacccc 35780606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 55255145 - 55255096
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 55255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 5128997 - 5129033
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  5128997 tgagggaggcccagctcgtttgagctgtttgcacccc 5129033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 17679293 - 17679233
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||| ||| |||||||||||   |||||||||| ||||||  ||||||||||||||||||    
T  17679293 aaaaataaaattgaggcccatccttgagggaggctcagctcgtttgagctgtttgcacccc 17679233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 47128057 - 47127997
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||| ||| |||||||||||   |||||||||||||||||  ||| ||||||||||||||    
T  47128057 aaaaaaaaaattgaggcccatccttgagggaggcccagctcgtttgggctgtttgcacccc 47127997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 47985181 - 47985268
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  47985181 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 47985268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 20091505 - 20091579
Alignment:
Q  27 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 101  Q
    |||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  20091505 aaaaaaaaattgaggcccatgactgagggaggcccagctctattgagctgtttgcaccccccagggacgggcctg 20091579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 19691973 - 19691896
Alignment:
Q  27 aaaacaaacttgaggcccat-gactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 102  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19691973 aaaaaaaaattgaggcccattgactgagggaggcccagctctgttgagctgtttgcaccccctcagggtcgggcctga 19691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 24525896 - 24525968
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24525896 ctagtgggtattaaaaaaaaaattgaggcccatgactaagggaggcccagctctgttgagctgtttgcacccc 24525968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 48984056 - 48984127
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48984056 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 48984127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 38415087 - 38415175
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 102  Q
    |||||||| || ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  38415087 ctagtgggtattaaaaa-aaatttgaggcccatgactaagggaggcccagctctgttgagctgtttgcatcccctcagagccgggcctga 38415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 25010340 - 25010254
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcct 100  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||    
T  25010340 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccaactctgttgagctgtttgtaccccctcagggccgggcct 25010254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 10329621 - 10329710
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 102  Q
    |||||||| || ||||| ||| |||||||||||||||||||||| || ||| ||||||| ||||||||| |||||||||  |||||||||    
T  10329621 ctagtgggtattaaaaaaaaaattgaggcccatgactgagggagacctagcgctgttgaactgtttgcaccccctcaggaccgggcctga 10329710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 23551283 - 23551355
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||| || ||||| ||| ||||||||||||| ||||||||| ||| |||| ||||||||||||||||||    
T  23551283 ctagtgggtattaaaaaaaaaattgaggcccatgattgagggaggtccaactctattgagctgtttgcacccc 23551355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 28749647 - 28749597
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  28749647 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 28749597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 10027667 - 10027615
Alignment:
Q  53 gggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctgatc 104  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||| |||||||    
T  10027667 gggaggcccagctctgtagagctgtttgcacctccccagggccggccctgatc 10027615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 12596443 - 12596479
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  12596443 tgagggaggcccagctcgtttgagctgtttgcacccc 12596479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 18777019 - 18777075
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcaggg 92  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||| ||||||||    
T  18777019 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctcaggg 18777075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 26716018 - 26715931
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  26716018 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 26715931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 27506965 - 27507041
Alignment:
Q  26 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  27506965 aaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 27507041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 24410311 - 24410234
Alignment:
Q  27 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 103  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  24410311 aaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccccttagggacgggcctgat 24410234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 9045907 - 9045848
Alignment:
Q  27 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9045907 aaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 9045848  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 8327554 - 8327488
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgc 81  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8327554 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgc 8327488  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 10762779 - 10762865
Alignment:
Q  16 agtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    |||||| || ||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||    
T  10762779 agtgggtattaaaaaaaaaattgaggcccatgattgagggaagcccagctctgttgagctgtttgcatcccctcagggccggccctg 10762865  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 4505744 - 4505695
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||| | |||||||||||||||||  ||||||||||||||||||    
T  4505744 tgaggcccatcattgagggaggcccagctcgtttgagctgtttgcacccc 4505695  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 3952966 - 3952915
Alignment:
Q  35 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  3952966 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3952915  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 3155068 - 3155019
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  3155068 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3155019  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 5952949 - 5952986
Alignment:
Q  55 gaggcccagctctgttgagctgtttgcacccctcaggg 92  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  5952949 gaggcccagctcgtttgagctgtttgcacccctcaggg 5952986  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 6964857 - 6964808
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  6964857 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 6964808  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 52968 - 53020
Alignment:
Q  54 ggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgatca 105  Q
    ||||||||||||| || |||||| ||||| |||||||||||||| ||||||||    
T  52968 ggaggcccagctcagtagagctgcttgcaccccctcagggtcggccctgatca 53020  T

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Target: scaffold0039 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 106454 - 106379
Alignment:
Q  27 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc-ctcagggtcgggcctg 101  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  106454 aaaaaaaatttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccctctcagggccgggcctg 106379  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 16199005 - 16199076
Alignment:
Q  15 tagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16199005 tagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 16199076  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 27923972 - 27923885
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 101  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  27923972 ctagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcagggacgggcctg 27923885  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 7670787 - 7670728
Alignment:
Q  42 cccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 101  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  7670787 cccatgactgagggaggcccaactctgttgagctgtttgcacccctcagggccgggcctg 7670728  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 38869572 - 38869660
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 102  Q
    |||||||| || ||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||||    
T  38869572 ctagtgggtattaaaaa-aaatttgaggcccatgactgagggaggcccagctttgttgagctgtttgcaccccctcatggccgggcctga 38869660  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 9364169 - 9364113
Alignment:
Q  27 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 83  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9364169 aaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 9364113  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 40389765 - 40389831
Alignment:
Q  36 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc-ctcagggtcgggcctg 101  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  40389765 ttgaggtccatgactgagggaggcccaggtctgttgagctgtttgcacccgctcagggccgggcctg 40389831  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 16799547 - 16799606
Alignment:
Q  27 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  16799547 aaaaaaaaattgaggcccatgactgagggaggcctagctctattgagctgtttgcacccc 16799606  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 15480228 - 15480279
Alignment:
Q  35 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  15480228 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 15480279  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 19523160 - 19523109
Alignment:
Q  35 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  19523160 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 19523109  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 34756615 - 34756664
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  34756615 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 34756664  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 22987481 - 22987517
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  22987481 tgagggaggcccagctcgtttgagctgtttgcacccc 22987517  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 31881604 - 31881640
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  31881604 tgagggaggcccagctcgtttgagctgtttgcacccc 31881640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 34855989 - 34855925
Alignment:
Q  37 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 101  Q
    ||||||||||  || |||||||||||||||  || ||||||||||| |||| |||| ||||||||    
T  34855989 tgaggcccataccttagggaggcccagctccatttagctgtttgcatccctaagggccgggcctg 34855925  T

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Target: scaffold0027 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 4236 - 4147
Alignment:
Q  14 ctagtgggaatgaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc-ctcagggtcgggcctgat 103  Q
    |||||||| || ||||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  4236 ctagtgggtattaaaaaaaaa-ttgaggcccatgactggaggaggcccagctctgttgagctgtttgcaccctctcagggccggccctgat 4147  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 1063 - 1027
Alignment:
Q  50 tgagggaggcccagctctgttgagctgtttgcacccc 86  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1063 tgagggaggcccagctcgtttgagctgtttgcacccc 1027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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