View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18562_high_1 (Length: 641)

Name: NF18562_high_1
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18562_high_1
NF18562_high_1
[»] chr3 (4 HSPs)
chr3 (23-633)||(9465856-9466466)
chr3 (23-228)||(9471835-9472040)
chr3 (231-277)||(9464721-9464767)
chr3 (317-408)||(44309512-44309606)
[»] chr1 (2 HSPs)
chr1 (23-228)||(5724004-5724209)
chr1 (25-228)||(44601022-44601224)
[»] chr6 (4 HSPs)
chr6 (234-427)||(21208947-21209138)
chr6 (255-408)||(193120-193276)
chr6 (243-383)||(4166644-4166785)
chr6 (243-383)||(4207318-4207459)
[»] chr4 (4 HSPs)
chr4 (341-441)||(36688847-36688946)
chr4 (255-331)||(41864476-41864553)
chr4 (301-419)||(41864566-41864685)
chr4 (235-277)||(41865610-41865652)
[»] scaffold0050 (1 HSPs)
scaffold0050 (243-383)||(62421-62562)
[»] chr2 (1 HSPs)
chr2 (234-273)||(9440452-9440491)


Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 23 - 633
Target Start/End: Complemental strand, 9466466 - 9465856
Alignment:
Q  23 aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaacca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  9466466 aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattccgccttattaacagcca 9466367  T
Q  123 gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9466366 gtacgacaagcctgattcaatttcaaggaaagataggatgcactacactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac 9466267  T
Q  223 tatgttgatggcatttaacctacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaat 322  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9466266 tatgttggtggcatttaacctacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaat 9466167  T
Q  323 tctaaattgacccttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaa 422  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9466166 tctaaattgacctttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaa 9466067  T
Q  423 ttgtctggaaatcatttatgaacgaagaacatttcgccaacatcaacaccagtctgagttcttaggttctcactctcacaccagtatttggggttgtcac 522  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9466066 ttgtctggaaatcatttatgaacgaagaacatttcaccaacatcaacaccagtctgagttcttaggttctcactctcacaccagtatttggggttgtcac 9465967  T
Q  523 cttcaccttcaccgtcattcctctttctctggtttcactcccaggttctcactccataggcatacctctctttctgtccctcgttcatttcttttgattt 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  9465966 cttcaccttcaccgtcattcctctttctctggtttcactcccaggttctcactccataggcatacctctctttctctccctctttcatttcttttgattt 9465867  T
Q  623 tgagatctgtg 633  Q
    |||||||||||    
T  9465866 tgagatctgtg 9465856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 9472040 - 9471835
Alignment:
Q  23 aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaacca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9472040 aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcttagaatggaagtttcaagactattctgccttattaacaacca 9471941  T
Q  123 gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9471940 gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac 9471841  T
Q  223 tatgtt 228  Q
    ||||||    
T  9471840 tatgtt 9471835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 9464721 - 9464767
Alignment:
Q  231 tggcatttaacctacacaagtaactctttttgtgtaccatacaaaaa 277  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  9464721 tggcatttaacctacacaagtaactctttttgtgtatcatacaaaaa 9464767  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 408
Target Start/End: Original strand, 44309512 - 44309606
Alignment:
Q  317 tgtaattctaaattgaccc---ttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaat 408  Q
    |||||||||||||||||||   |||  | ||||||||||||| | |||||||| |||||||||||||||| ||||||| |  |||||||| ||||    
T  44309512 tgtaattctaaattgacccccctttagtggtttaaatcaaagaacctccccaagacaacctaatatactactttggcctaattaatttctgcaat 44309606  T

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Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 5724209 - 5724004
Alignment:
Q  23 aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaacca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5724209 aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaacca 5724110  T
Q  123 gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5724109 gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac 5724010  T
Q  223 tatgtt 228  Q
    ||||||    
T  5724009 tatgtt 5724004  T

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Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 44601224 - 44601022
Alignment:
Q  25 agaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaac---- 120  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||        
T  44601224 agaacaaattaacaaataacttgtcaagtgagactcaaaaatcatcacagtcaacctagagtggacgtttcaaaactattctgccttattaacaactatt 44601125  T
Q  121 cagtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcat 220  Q
     |||  ||||||| | ||||||||||||||||||||||||     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44601124 tagttagacaagcttaattcaatttcaaggaaagatagga-----tgcattgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcat 44601030  T
Q  221 actatgtt 228  Q
    ||||||||    
T  44601029 actatgtt 44601022  T

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Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 234 - 427
Target Start/End: Original strand, 21208947 - 21209138
Alignment:
Q  234 catttaacctacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgac 333  Q
    |||||| | |||||||  ||||||||||| ||| |||||||||||||  ||||||||||||||  | ||| || || |||| | ||||||||||||||||    
T  21208947 catttagcatacacaaccaactctttttgggtatcatacaaaaagttattttaacctttaatattaggtggac-aggtttaagagtaattctaaattgac 21209045  T
Q  334 cc-ttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaattgtc 427  Q
    || ||||||||||| ||||||| || ||||| ||||||||||||||||||| ||| | |||  |||||||||| |  ||||||||||||||||||    
T  21209046 ccattttattgtttgaatcaaactacctccctaaaacaacctaatatactacttttgtcaaattaatttcttcga--tattttttattaattgtc 21209138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 255 - 408
Target Start/End: Complemental strand, 193276 - 193120
Alignment:
Q  255 tctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgaccc---ttttattgtttaaatc 351  Q
    |||||||||||| |||||||||||||  ||| ||| ||||||  | ||| |   ||||||  |||||||||||||||||||   |||  | |||||||||    
T  193276 tctttttgtgtatcatacaaaaagttattttgacccttaatattaggtggataggttttacttgtaattctaaattgacccccctttagtggtttaaatc 193177  T
Q  352 aaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaat 408  Q
    |||| | |||||||| |||||||||||||||| ||||||| |  |||||||| ||||    
T  193176 aaagaacctccccaagacaacctaatatactactttggcctaattaatttctgcaat 193120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 4166644 - 4166785
Alignment:
Q  243 tacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgaccc-ttttat 341  Q
    |||||||  ||||||||||| |||||||||||     || || ||||||||| | || ||||||| ||||||||| |||| |||||||||||| |||| |    
T  4166644 tacacaaccaactctttttgggtaccatacaattttctttttcaacctttaacaacaggtgaaccggttttatgtctaatactaaattgaccctttttgt 4166743  T
Q  342 tgtttaaatcaaagtatctccccaaaacaacctaatatacta 383  Q
    ||||||||  ||| || |||| ||||||||| ||||||||||    
T  4166744 tgtttaaactaaaatacctcctcaaaacaacataatatacta 4166785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 4207318 - 4207459
Alignment:
Q  243 tacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgaccc-ttttat 341  Q
    |||||||  ||||||||||| |||||||||||     || || ||||||||| | || ||||||| ||||||||| |||| |||||||||||| |||| |    
T  4207318 tacacaaccaactctttttgggtaccatacaattttctttttcaacctttaacaacaggtgaaccggttttatgtctaatactaaattgaccctttttgt 4207417  T
Q  342 tgtttaaatcaaagtatctccccaaaacaacctaatatacta 383  Q
    ||||||||  ||| || |||| ||||||||| ||||||||||    
T  4207418 tgtttaaactaaaatacctcctcaaaacaacataatatacta 4207459  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 341 - 441
Target Start/End: Complemental strand, 36688946 - 36688847
Alignment:
Q  341 ttgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaattgtctggaaatcattta 440  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||  |||||||| |||| | | ||||||||||||||| |||||||||||    
T  36688946 ttgtttaaatcaaagtacctccc-aaaacaacccaatatactattttggtcaaattaatttctccaatatttcttttattaattgtctagaaatcattta 36688848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 41864476 - 41864553
Alignment:
Q  255 tctttttgtgtaccatacaaaaagtttcttt-aacctttaatagcaagtgaaccagttttatgtgtaattctaaattg 331  Q
    ||||||||||||||||||||||||||| ||| ||||||||  |||| ||||| |||||||| ||||||||||||||||    
T  41864476 tctttttgtgtaccatacaaaaagttttttttaacctttagcagcaggtgaatcagttttaagtgtaattctaaattg 41864553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 41864566 - 41864685
Alignment:
Q  301 gtgaaccagttttatgtgtaattctaaatt-gacccttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataat 399  Q
    ||||| |||||||| ||||||||||||||| | |||  || |||||||| |||||||| ||||| ||||||||| |||||  ||||||  ||||  ||||    
T  41864566 gtgaatcagttttaagtgtaattctaaattggccccaattgttgtttaattcaaagtacctccctaaaacaacccaatattatattttaaccaaattaat 41864665  T
Q  400 ttcttcaatgtattttttat 419  Q
    |||| |||| ||||||||||    
T  41864666 ttctccaatatattttttat 41864685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 41865652 - 41865610
Alignment:
Q  235 atttaacctacacaagtaactctttttgtgtaccatacaaaaa 277  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  41865652 atttaacctacacaagtaactctttttgtgtatcatactaaaa 41865610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 383
Target Start/End: Complemental strand, 62562 - 62421
Alignment:
Q  243 tacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattga-cccttttat 341  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||||| || |||  |  |||||   |||||  ||||||||| || ||| ||||||| |    
T  62562 tacacaaggcactctttttgtgtatcatacaaaaagtttgtttaacccttgatattagatgaacatattttacttgtaattcttaaatgaccccttttgt 62463  T
Q  342 tgtttaaatcaaagtatctccccaaaacaacctaatatacta 383  Q
     |||||||| |||  | |||||||||||||||||||||||||    
T  62462 agtttaaatgaaaaaacctccccaaaacaacctaatatacta 62421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 9440491 - 9440452
Alignment:
Q  234 catttaacctacacaagtaactctttttgtgtaccataca 273  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  9440491 catttaacatacacaagtaactctttttgtgtatcataca 9440452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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