View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18562_high_10 (Length: 279)
Name: NF18562_high_10
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 488892 - 489165
Alignment:
| Q |
1 |
ttggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttcaatctacacaccct |
100 |
Q |
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| T |
488892 |
ttggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttcaatctacacaccct |
488991 |
T |
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| Q |
101 |
tgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgacaccgttggaaatcacaattttgaccttctcaagaaactag |
200 |
Q |
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| T |
488992 |
tgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgacactgttggaaatcacaattttgaccttctcaagaaactag |
489091 |
T |
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| Q |
201 |
ctttgcctgatggtaccatccttagatgtgaaacctatgctctcccaactaaggactgtctcttctctgttcct |
274 |
Q |
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| T |
489092 |
ctttgcctgatggtaccatccttagatgtgaaacctatgctctcccaactaaggactgtctcttttctgatcct |
489165 |
T |
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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 34697188 - 34697039
Alignment:
| Q |
1 |
ttggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttcaatctacacaccct |
100 |
Q |
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| T |
34697188 |
ttggctccaaggttgtcacatggtacattgtgcctataacagtttatggatgggaaatttcattcacccagattgggacatgtttcaatccactcaccct |
34697089 |
T |
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| Q |
101 |
tgtgctgcttttcatgcagcttctagagccatatctggtggtccaattta |
150 |
Q |
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| T |
34697088 |
tgtgctgaatttcatgctgcctctagagctgtctctggtggaccaattta |
34697039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 43637935 - 43637766
Alignment:
| Q |
8 |
caaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttcaatctacacacccttgtgctg |
107 |
Q |
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| T |
43637935 |
caaggatgtcacatggtgcattgtgcctataacagcttatggatgggaaattttatacaaccagattgggacatgttccaatctcatcatgcttgttctg |
43637836 |
T |
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| Q |
108 |
cttttcatgcagcttctagagccatatctggtggtccaatttacataagtgacaccgttggaaatcacaa |
177 |
Q |
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| T |
43637835 |
aatttcatgctgcttctcgagcaatctctggcggaccaatttatgtaagcgactctgttggaaaccacaa |
43637766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 43975962 - 43976035
Alignment:
| Q |
17 |
cacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttcaatc |
90 |
Q |
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| T |
43975962 |
cacatgattcattgttcctacaatagcttatggatgggacaaatgattcaacctgattgggacatgtttcaatc |
43976035 |
T |
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