View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18562_high_12 (Length: 258)
Name: NF18562_high_12
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 6817506 - 6817309
Alignment:
| Q |
23 |
aatggtaacagtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggt |
122 |
Q |
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| T |
6817506 |
aatggtaacggtgcattgcaccttgctgctacttatagaaggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggt |
6817407 |
T |
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| Q |
123 |
ataaggtaaagagtatttctccatttttaattatttgtcttctct----tatagtttagaaatcttcacaaactagcaatttgtcatgtcacatagga |
216 |
Q |
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| T |
6817406 |
ataaggtaaagagtatttctccatttttaattatttgtcttctcttatatatagtttagaaatcttcacaaactagcaatttgtcatgtcacatagga |
6817309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 6809366 - 6809183
Alignment:
| Q |
23 |
aatggtaacagtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggt |
122 |
Q |
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| T |
6809366 |
aatggtaacagtgcattgcaccttgctgctacttatagaaggtttaagccttggcgtgtacctggtgcggcaatgcaaatgcagtgggaatacaagtggt |
6809267 |
T |
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| Q |
123 |
ataaggtaaagagtatttctccatttttaattatttgtcttctcttatagtttagaaatcttcacaaactagcaatttgtcatgt |
207 |
Q |
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| T |
6809266 |
ataaggtaaagattatttctccatatttagttatttaccctc-cctataatttagaaattttcacaaactagcaatttgtcatgt |
6809183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 6832009 - 6831902
Alignment:
| Q |
23 |
aatggtaacagtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggt |
122 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
6832009 |
aatggtaacagtgcattgcatcttgctgctacttataggaggtttaagccttggcgtgtgcccggtgctgcaatgcaaatgcagtgggaatacaagtggt |
6831910 |
T |
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| Q |
123 |
ataaggta |
130 |
Q |
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|||||||| |
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| T |
6831909 |
ataaggta |
6831902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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