View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18562_high_2 (Length: 532)
Name: NF18562_high_2
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 121 - 518
Target Start/End: Complemental strand, 45540468 - 45540071
Alignment:
| Q |
121 |
gaactaccaatgtttgtgtcatcctcaacagtgtcgttggttgcctcacttggtcctaggaatggattttggaacgatgacgacaatgatgtcacggagg |
220 |
Q |
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| T |
45540468 |
gaactaccaatgtttgtgtcatcctcaacagtgtcgttggttgcctcacttggtcctatgaatggattttggaacgatgacgacaatgatgtcacggggg |
45540369 |
T |
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| Q |
221 |
cttggttgatgtctggtatatgagaatgagcttccaaaggattgttagatgctctcccaagctcttgttctgttaacggaggtggtggttgataagcatt |
320 |
Q |
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| T |
45540368 |
cttggttgatgtctggtatatgagaatgagcttccaaaggattgttagatgctctcccaagctcttgttctgttaacggaggtggtggttgataagcatt |
45540269 |
T |
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| Q |
321 |
tgtagcatgaccagttcgtaaatcaatattgactttgttgtcacctttaacttccatcggctaacaacgtcaagtgaacaaggtttgaagattccgatgg |
420 |
Q |
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| T |
45540268 |
tgtggcatgaccagttcgtaaatcaatattgactttgttgtcacctttaacttccatcggctaacaacgtcaagtgaacaaggtttgaagattccgatgg |
45540169 |
T |
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| Q |
421 |
aaattatggtaagctgtagaatcaaatgttacagcaagaacccgttaaaacaccataccacnnnnnnnnnnnntcatgtcaaagtttaaggaaaaaca |
518 |
Q |
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| T |
45540168 |
aaattatggtaagctgtaaaatcaaatgttacaacaagaacccgttaaaacaccataccacaaaaacaaaaaatcatgtcaaagtttaaggaaaaaca |
45540071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 45540618 - 45540505
Alignment:
| Q |
10 |
acatcatcagagtcactgttatttgtatttgttttctcattgaatgaactctcttgcgacaattcatatgtggatgttggtgaattgagatttgaaataa |
109 |
Q |
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| T |
45540618 |
acatcatcggagtcactgttatttgtatttgttttctcattgaatgaactttcttgcgacaattcatatgtggatgttggtgaattgagatttgaaataa |
45540519 |
T |
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| Q |
110 |
cattagttgaagaa |
123 |
Q |
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| T |
45540518 |
cattagttgaagaa |
45540505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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