View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18562_high_6 (Length: 365)

Name: NF18562_high_6
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18562_high_6
NF18562_high_6
[»] chr1 (2 HSPs)
chr1 (18-353)||(5129891-5130225)
chr1 (209-265)||(26324397-26324453)
[»] chr5 (12 HSPs)
chr5 (124-200)||(8640656-8640732)
chr5 (124-179)||(9002546-9002601)
chr5 (124-175)||(8534701-8534752)
chr5 (124-193)||(8548797-8548866)
chr5 (132-187)||(8677535-8677590)
chr5 (124-162)||(1601078-1601116)
chr5 (132-193)||(8528118-8528179)
chr5 (132-168)||(9002294-9002330)
chr5 (132-187)||(8636311-8636366)
chr5 (125-168)||(8640461-8640504)
chr5 (132-162)||(9075170-9075200)
chr5 (209-265)||(8528038-8528094)
[»] chr7 (2 HSPs)
chr7 (124-193)||(48362540-48362609)
chr7 (127-179)||(35777535-35777587)
[»] chr6 (1 HSPs)
chr6 (127-163)||(16715635-16715671)
[»] chr4 (1 HSPs)
chr4 (209-265)||(9442205-9442261)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 5130225 - 5129891
Alignment:
Q  18 cttataaatctcctttagttgctaagtagtcaatagtttcacaacacaattccctcccctgcaatttgcaattttagctagtattacataaatattgttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  5130225 cttataaatctcctttagttgctaagtagtcaatagtttcacaacacaat-ccctcccctgcaaattgcagttttagctagtattacataaatattgttt 5130127  T
Q  118 ttatttatttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgtggaaagtacacattcttcatcatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130126 ttatttatttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgtggaaagtacacattcttcatcatc 5130027  T
Q  218 ttatcctgacataataaatatatcttcctccgaatctgatggagaagactgaagaattcaacgaagagcccacttcttaagaatagtactgtatgtgtgt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  5130026 ttatcctgacataataaatatatcttcctccgaatctgatggagaagactgaagaattcaacgaagagcccacttcttaagaatagtattgtatgtgtat 5129927  T
Q  318 tttctcattgattggtattctgactcctgcttagta 353  Q
    ||||||||||||||||||||||||||||||||||||    
T  5129926 tttctcattgattggtattctgactcctgcttagta 5129891  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 26324397 - 26324453
Alignment:
Q  209 ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga 265  Q
    |||||||||||||  |||| | ||||||||||||||||||  ||||||||| |||||    
T  26324397 ttcatcatcttatggtgacttgataaatatatcttcctccttatctgatggtgaaga 26324453  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 8640732 - 8640656
Alignment:
Q  124 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgtggaaagt 200  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| |||| ||||||| |||||    
T  8640732 atttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctcaacggattgtgcaaagt 8640656  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 9002601 - 9002546
Alignment:
Q  124 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttg 179  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  9002601 atttatataggtgtgcaaagtttaaattgagggaagaaagtgaagttttttccttg 9002546  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 8534752 - 8534701
Alignment:
Q  124 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttc 175  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  8534752 atttatataggtgtgcaaagtttaaattgcgggaagaaaaggaagttctttc 8534701  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 8548797 - 8548866
Alignment:
Q  124 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgt 193  Q
    ||||||| ||||||| |||||||||||| | ||||||||| |||||| |||| ||||| |||||||||||    
T  8548797 atttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgt 8548866  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 8677590 - 8677535
Alignment:
Q  132 aggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaaca 187  Q
    |||||||||||  || ||||||||||||||||||||||| |||||||||| |||||    
T  8677590 aggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttccttgtcacaaca 8677535  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 1601078 - 1601116
Alignment:
Q  124 atttatacaggtgtgcaaagtttaaattgcgggaagaaa 162  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  1601078 atttatataggtgtgcaaagtttaaattgcgggaagaaa 1601116  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 8528179 - 8528118
Alignment:
Q  132 aggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgt 193  Q
    ||||||||||||||||||||||||| |||||| || ||| ||||  |||| |||||||||||    
T  8528179 aggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgt 8528118  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 9002330 - 9002294
Alignment:
Q  132 aggtgtgcaaagtttaaattgcgggaagaaaatgaag 168  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9002330 aggtgtgcaaagtttaaattgcgtgaagaaaatgaag 9002294  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 8636366 - 8636311
Alignment:
Q  132 aggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaaca 187  Q
    |||||||||||  || |||||| |||||||||||||||| |||||||||| |||||    
T  8636366 aggtgtgcaaatgttgaattgccggaagaaaatgaagttctttccttgtctcaaca 8636311  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 8640504 - 8640461
Alignment:
Q  125 tttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaag 168  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||    
T  8640504 tttatataggtgtgcaaaatttaaattgcgtgaagaaaatgaag 8640461  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 9075170 - 9075200
Alignment:
Q  132 aggtgtgcaaagtttaaattgcgggaagaaa 162  Q
    |||||||||||||||||||||||||||||||    
T  9075170 aggtgtgcaaagtttaaattgcgggaagaaa 9075200  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 8528094 - 8528038
Alignment:
Q  209 ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga 265  Q
    |||||||||||||  |||| | ||||||||||||||||||  ||||||||| |||||    
T  8528094 ttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaaga 8528038  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 48362540 - 48362609
Alignment:
Q  124 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgt 193  Q
    ||||||| |||||||||||||||||||||| ||||||||| |||| | | ||  |||| |||||||||||    
T  48362540 atttatataggtgtgcaaagtttaaattgcaggaagaaaaggaaggtatatctctgtctcaacagattgt 48362609  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 35777587 - 35777535
Alignment:
Q  127 tatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttg 179  Q
    |||| ||||||||||||| ||||||| ||||||||| ||||||| ||| ||||    
T  35777587 tatataggtgtgcaaagtataaattgtgggaagaaagtgaagttcttttcttg 35777535  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 16715671 - 16715635
Alignment:
Q  127 tatacaggtgtgcaaagtttaaattgcgggaagaaaa 163  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  16715671 tatataggtgtggaaagtttaaattgcgggaagaaaa 16715635  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 9442261 - 9442205
Alignment:
Q  209 ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga 265  Q
    |||||||||||||  |||| | ||||||||||||||||||  ||||||||| |||||    
T  9442261 ttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaaga 9442205  T

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