View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18562_low_1 (Length: 641)
Name: NF18562_low_1
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_low_1 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 23 - 633
Target Start/End: Complemental strand, 9466466 - 9465856
Alignment:
| Q |
23 |
aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaacca |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
9466466 |
aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattccgccttattaacagcca |
9466367 |
T |
|
| Q |
123 |
gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9466366 |
gtacgacaagcctgattcaatttcaaggaaagataggatgcactacactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac |
9466267 |
T |
|
| Q |
223 |
tatgttgatggcatttaacctacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaat |
322 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9466266 |
tatgttggtggcatttaacctacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaat |
9466167 |
T |
|
| Q |
323 |
tctaaattgacccttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaa |
422 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9466166 |
tctaaattgacctttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaa |
9466067 |
T |
|
| Q |
423 |
ttgtctggaaatcatttatgaacgaagaacatttcgccaacatcaacaccagtctgagttcttaggttctcactctcacaccagtatttggggttgtcac |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9466066 |
ttgtctggaaatcatttatgaacgaagaacatttcaccaacatcaacaccagtctgagttcttaggttctcactctcacaccagtatttggggttgtcac |
9465967 |
T |
|
| Q |
523 |
cttcaccttcaccgtcattcctctttctctggtttcactcccaggttctcactccataggcatacctctctttctgtccctcgttcatttcttttgattt |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
9465966 |
cttcaccttcaccgtcattcctctttctctggtttcactcccaggttctcactccataggcatacctctctttctctccctctttcatttcttttgattt |
9465867 |
T |
|
| Q |
623 |
tgagatctgtg |
633 |
Q |
| |
|
||||||||||| |
|
|
| T |
9465866 |
tgagatctgtg |
9465856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 9472040 - 9471835
Alignment:
| Q |
23 |
aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaacca |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9472040 |
aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcttagaatggaagtttcaagactattctgccttattaacaacca |
9471941 |
T |
|
| Q |
123 |
gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9471940 |
gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac |
9471841 |
T |
|
| Q |
223 |
tatgtt |
228 |
Q |
| |
|
|||||| |
|
|
| T |
9471840 |
tatgtt |
9471835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 9464721 - 9464767
Alignment:
| Q |
231 |
tggcatttaacctacacaagtaactctttttgtgtaccatacaaaaa |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9464721 |
tggcatttaacctacacaagtaactctttttgtgtatcatacaaaaa |
9464767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 408
Target Start/End: Original strand, 44309512 - 44309606
Alignment:
| Q |
317 |
tgtaattctaaattgaccc---ttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaat |
408 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||| | |||||||| |||||||||||||||| ||||||| | |||||||| |||| |
|
|
| T |
44309512 |
tgtaattctaaattgacccccctttagtggtttaaatcaaagaacctccccaagacaacctaatatactactttggcctaattaatttctgcaat |
44309606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 5724209 - 5724004
Alignment:
| Q |
23 |
aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaacca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5724209 |
aaagaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaacca |
5724110 |
T |
|
| Q |
123 |
gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5724109 |
gtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcatac |
5724010 |
T |
|
| Q |
223 |
tatgtt |
228 |
Q |
| |
|
|||||| |
|
|
| T |
5724009 |
tatgtt |
5724004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 44601224 - 44601022
Alignment:
| Q |
25 |
agaacaaattaacaaataacttgtccagtgagactcaaaaatcatcacagtcagcctagaatggaagtttcaagactattctgccttattaacaac---- |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
44601224 |
agaacaaattaacaaataacttgtcaagtgagactcaaaaatcatcacagtcaacctagagtggacgtttcaaaactattctgccttattaacaactatt |
44601125 |
T |
|
| Q |
121 |
cagtacgacaagcctgattcaatttcaaggaaagataggatgcactgcactgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcat |
220 |
Q |
| |
|
||| ||||||| | |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44601124 |
tagttagacaagcttaattcaatttcaaggaaagatagga-----tgcattgcaatgcaatcacctctatctaaattattatgtaaatcaaatgcatcat |
44601030 |
T |
|
| Q |
221 |
actatgtt |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
44601029 |
actatgtt |
44601022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 234 - 427
Target Start/End: Original strand, 21208947 - 21209138
Alignment:
| Q |
234 |
catttaacctacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgac |
333 |
Q |
| |
|
|||||| | ||||||| ||||||||||| ||| ||||||||||||| |||||||||||||| | ||| || || |||| | |||||||||||||||| |
|
|
| T |
21208947 |
catttagcatacacaaccaactctttttgggtatcatacaaaaagttattttaacctttaatattaggtggac-aggtttaagagtaattctaaattgac |
21209045 |
T |
|
| Q |
334 |
cc-ttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaattgtc |
427 |
Q |
| |
|
|| ||||||||||| ||||||| || ||||| ||||||||||||||||||| ||| | ||| |||||||||| | |||||||||||||||||| |
|
|
| T |
21209046 |
ccattttattgtttgaatcaaactacctccctaaaacaacctaatatactacttttgtcaaattaatttcttcga--tattttttattaattgtc |
21209138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 255 - 408
Target Start/End: Complemental strand, 193276 - 193120
Alignment:
| Q |
255 |
tctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgaccc---ttttattgtttaaatc |
351 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||| |||||| | ||| | |||||| ||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
193276 |
tctttttgtgtatcatacaaaaagttattttgacccttaatattaggtggataggttttacttgtaattctaaattgacccccctttagtggtttaaatc |
193177 |
T |
|
| Q |
352 |
aaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaat |
408 |
Q |
| |
|
|||| | |||||||| |||||||||||||||| ||||||| | |||||||| |||| |
|
|
| T |
193176 |
aaagaacctccccaagacaacctaatatactactttggcctaattaatttctgcaat |
193120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 4166644 - 4166785
Alignment:
| Q |
243 |
tacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgaccc-ttttat |
341 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || || ||||||||| | || ||||||| ||||||||| |||| |||||||||||| |||| | |
|
|
| T |
4166644 |
tacacaaccaactctttttgggtaccatacaattttctttttcaacctttaacaacaggtgaaccggttttatgtctaatactaaattgaccctttttgt |
4166743 |
T |
|
| Q |
342 |
tgtttaaatcaaagtatctccccaaaacaacctaatatacta |
383 |
Q |
| |
|
|||||||| ||| || |||| ||||||||| |||||||||| |
|
|
| T |
4166744 |
tgtttaaactaaaatacctcctcaaaacaacataatatacta |
4166785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 4207318 - 4207459
Alignment:
| Q |
243 |
tacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgaccc-ttttat |
341 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || || ||||||||| | || ||||||| ||||||||| |||| |||||||||||| |||| | |
|
|
| T |
4207318 |
tacacaaccaactctttttgggtaccatacaattttctttttcaacctttaacaacaggtgaaccggttttatgtctaatactaaattgaccctttttgt |
4207417 |
T |
|
| Q |
342 |
tgtttaaatcaaagtatctccccaaaacaacctaatatacta |
383 |
Q |
| |
|
|||||||| ||| || |||| ||||||||| |||||||||| |
|
|
| T |
4207418 |
tgtttaaactaaaatacctcctcaaaacaacataatatacta |
4207459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 341 - 441
Target Start/End: Complemental strand, 36688946 - 36688847
Alignment:
| Q |
341 |
ttgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaattgtctggaaatcattta |
440 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||| |||||||| |||| | | ||||||||||||||| ||||||||||| |
|
|
| T |
36688946 |
ttgtttaaatcaaagtacctccc-aaaacaacccaatatactattttggtcaaattaatttctccaatatttcttttattaattgtctagaaatcattta |
36688848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 41864476 - 41864553
Alignment:
| Q |
255 |
tctttttgtgtaccatacaaaaagtttcttt-aacctttaatagcaagtgaaccagttttatgtgtaattctaaattg |
331 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
41864476 |
tctttttgtgtaccatacaaaaagttttttttaacctttagcagcaggtgaatcagttttaagtgtaattctaaattg |
41864553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 41864566 - 41864685
Alignment:
| Q |
301 |
gtgaaccagttttatgtgtaattctaaatt-gacccttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataat |
399 |
Q |
| |
|
||||| |||||||| ||||||||||||||| | ||| || |||||||| |||||||| ||||| ||||||||| ||||| |||||| |||| |||| |
|
|
| T |
41864566 |
gtgaatcagttttaagtgtaattctaaattggccccaattgttgtttaattcaaagtacctccctaaaacaacccaatattatattttaaccaaattaat |
41864665 |
T |
|
| Q |
400 |
ttcttcaatgtattttttat |
419 |
Q |
| |
|
|||| |||| |||||||||| |
|
|
| T |
41864666 |
ttctccaatatattttttat |
41864685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 41865652 - 41865610
Alignment:
| Q |
235 |
atttaacctacacaagtaactctttttgtgtaccatacaaaaa |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
41865652 |
atttaacctacacaagtaactctttttgtgtatcatactaaaa |
41865610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 383
Target Start/End: Complemental strand, 62562 - 62421
Alignment:
| Q |
243 |
tacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattga-cccttttat |
341 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||||| || ||| | ||||| ||||| ||||||||| || ||| ||||||| | |
|
|
| T |
62562 |
tacacaaggcactctttttgtgtatcatacaaaaagtttgtttaacccttgatattagatgaacatattttacttgtaattcttaaatgaccccttttgt |
62463 |
T |
|
| Q |
342 |
tgtttaaatcaaagtatctccccaaaacaacctaatatacta |
383 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
62462 |
agtttaaatgaaaaaacctccccaaaacaacctaatatacta |
62421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 9440491 - 9440452
Alignment:
| Q |
234 |
catttaacctacacaagtaactctttttgtgtaccataca |
273 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
9440491 |
catttaacatacacaagtaactctttttgtgtatcataca |
9440452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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