View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18562_low_10 (Length: 283)
Name: NF18562_low_10
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_low_10 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0157 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 8976411 - 8976587
Alignment:
| Q |
16 |
ttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg |
115 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
8976411 |
ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattattta |
8976510 |
T |
|
| Q |
116 |
gctaaacatgcatctcattctttgatctaatctgattgcagactttcattttcccatgccatattccaatcagatat |
192 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8976511 |
gctaaacatgcatctcatcctttgatctaatctgatcgcagactttcatttccccatgccatattccaatcagatat |
8976587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 10092515 - 10092641
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10092515 |
atacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
10092614 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattcttt |
138 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
10092615 |
tttggctaagcatgcatctcattcttt |
10092641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 33045545 - 33045411
Alignment:
| Q |
16 |
ttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg |
115 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33045545 |
ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttg |
33045446 |
T |
|
| Q |
116 |
gctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
33045445 |
gttaagcatgcatctcatcctttgatctaatctga |
33045411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 3065701 - 3065808
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||||||| ||||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
3065701 |
atacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctcc-aaacaagggagaccgttggatctcatca |
3065799 |
T |
|
| Q |
112 |
tttggctaa |
120 |
Q |
| |
|
||||||||| |
|
|
| T |
3065800 |
tttggctaa |
3065808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 30908483 - 30908414
Alignment:
| Q |
16 |
ttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaa |
85 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
30908483 |
ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaa |
30908414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 16246705 - 16246778
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaa |
85 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
16246705 |
atacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaa |
16246778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 14678139 - 14678001
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14678139 |
atacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
14678040 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
14678039 |
tttggctaagcatgcatctcatcctttgatctaatctga |
14678001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 5657774 - 5657912
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5657774 |
atacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctcatca |
5657873 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
5657874 |
tttggttaagcatgcatctcatcctttgatctaatctga |
5657912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 27541676 - 27541539
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
27541676 |
atacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaa-caagggacgccgttggatctcatca |
27541578 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
27541577 |
tttggctaagcatgcatctcatcctttgatctaatctga |
27541539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 31100990 - 31100852
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31100990 |
atacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctcatca |
31100891 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||| ||| |||| ||||||| |||||||||||||||| |
|
|
| T |
31100890 |
tttggttaagcatgtatctcatcctttgatctaatctga |
31100852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 5662588 - 5662732
Alignment:
| Q |
31 |
attaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaaacatgcatct |
130 |
Q |
| |
|
||||| |||| |||||||||| ||||| ||||| ||| || ||| ||| |||| ||||| | ||||| |||||||||||||||||| ||| ||||| |
|
|
| T |
5662588 |
attaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatcatttggctaggcattcatct |
5662686 |
T |
|
| Q |
131 |
cattctttgatctaatctgattgcagactttcattttcccatgcca |
176 |
Q |
| |
|
||| ||||||| |||||||| | || |||||||||| ||||||||| |
|
|
| T |
5662687 |
catcctttgatttaatctgacttcaaactttcatttccccatgcca |
5662732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 24788151 - 24788079
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaa |
84 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| | |||||||| |||| |
|
|
| T |
24788151 |
atacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaattagttttggcgccaa |
24788079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 23738660 - 23738731
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaa |
84 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||| |||| ||||| | |||||||||||| |
|
|
| T |
23738660 |
atacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa |
23738731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 1262091 - 1262229
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1262091 |
atacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctcatca |
1262190 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
1262191 |
tttggctaagcatgcatctcatcctttgatctaatctga |
1262229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 43071500 - 43071362
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43071500 |
atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
43071401 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
43071400 |
tttggctaagcatgcatctcatcctttgatctaatctga |
43071362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 26910099 - 26909961
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
26910099 |
atacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatcttatca |
26910000 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
26909999 |
tttggctaagcatgcatctcatcctttgatctaatctga |
26909961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 48849925 - 48849787
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48849925 |
atacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctcatca |
48849826 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
48849825 |
tttggctaagcatgcatctcatcctttgatctaatctga |
48849787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 22007347 - 22007416
Alignment:
| Q |
16 |
ttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaa |
85 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22007347 |
ttatatctaatttttgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaaa |
22007416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 22009646 - 22009508
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22009646 |
atacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
22009547 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
22009546 |
tttggctaagcatgcatctcatcctttgatctaatctga |
22009508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 9043805 - 9043943
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9043805 |
atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
9043904 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
9043905 |
tttggctaagcatgcatctcatcctttgatctaatctga |
9043943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 30442662 - 30442527
Alignment:
| Q |
15 |
cttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcattt |
114 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30442662 |
cttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcattt |
30442563 |
T |
|
| Q |
115 |
ggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| |
|
|
| T |
30442562 |
ggctaagcatgcatctcatcctttgatctaatctga |
30442527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 7473607 - 7473469
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7473607 |
atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
7473508 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||| ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
7473507 |
tttagctaagcatgcatctcatcctttgatctaatctga |
7473469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 26841074 - 26840988
Alignment:
| Q |
20 |
atctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatct |
106 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26841074 |
atctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct |
26840988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 19085495 - 19085422
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaa |
85 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
19085495 |
atacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa |
19085422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 22004571 - 22004412
Alignment:
| Q |
15 |
cttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcattt |
114 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||| ||||| ||||| ||| || |||| ||| |||| ||||| | ||||||||||||||||||| |
|
|
| T |
22004571 |
cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaat-caaggtggtccgttggatctcatcattt |
22004473 |
T |
|
| Q |
115 |
ggctaaacatgcatctcattctttgatctaatctgattgcagactttcattttcccatgcc |
175 |
Q |
| |
|
|||| | ||| ||| |||| |||||||||||| | | | || | |||||||| |||||||| |
|
|
| T |
22004472 |
ggctcagcattcatatcatcctttgatctaatgtcacttcaaagtttcatttccccatgcc |
22004412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 31685080 - 31685218
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
31685080 |
atacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctcatca |
31685179 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
31685180 |
tttggctaagcatgcatctcatcctttgatctaatctga |
31685218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 37982342 - 37982490
Alignment:
| Q |
2 |
tgggtagattatacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttg |
101 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||| |||||| || ||||| ||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37982342 |
tgggtaaatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttg |
37982441 |
T |
|
| Q |
102 |
gatctcatcatttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
37982442 |
gatctcatcatttggctaagcatgcatctcatcctttaatctaatctga |
37982490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 2549940 - 2550077
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2549940 |
atacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-atca |
2550038 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
2550039 |
tttggctaagcatgcatctcatcctttgatttaatctga |
2550077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 53973404 - 53973266
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
53973404 |
atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctcatca |
53973305 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
53973304 |
tttggctaagcctgcatctcatcctttgatctaatctga |
53973266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 17681770 - 17681905
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||| ||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
17681770 |
atacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaaggggggccgttggatctcatca |
17681868 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatct |
148 |
Q |
| |
|
||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
17681869 |
tttggttaagcatgcatctcatcctttgatctaatct |
17681905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 19882225 - 19882091
Alignment:
| Q |
16 |
ttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttg |
115 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| || |||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19882225 |
ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg |
19882126 |
T |
|
| Q |
116 |
gctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |
|
|
| T |
19882125 |
gctaagcatgcatctcatcctttgatctaatctga |
19882091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 24762016 - 24761853
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
24762016 |
atacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctcatca |
24761917 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctgattgcagactttcattttcccatgcc |
175 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||| ||| | || ||||| |||| |||||||| |
|
|
| T |
24761916 |
tttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcc |
24761853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 24815918 - 24816080
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
24815918 |
atacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctcatca |
24816017 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctgattgcagactttcattttcccatgc |
174 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||| ||| | || ||||| |||| ||||||| |
|
|
| T |
24816018 |
tttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgc |
24816080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 12538753 - 12538620
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||| ||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12538753 |
atacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctcatca |
12538655 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaat |
146 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
12538654 |
tttggctaagcatgcatcacatcctttgatctaat |
12538620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 53352879 - 53352716
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||| | | | |||||||||||||||| |
|
|
| T |
53352879 |
atacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctcatca |
53352780 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctgattgcagactttcattttcccatgcc |
175 |
Q |
| |
|
||||||| | |||||||||| ||||||| |||| ||| | || ||||| |||| | |||||| |
|
|
| T |
53352779 |
tttggctcagtgtgcatctcatcctttgatttaatttgacttcaaacttttatttcctcatgcc |
53352716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 53027870 - 53027736
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
|||||||||||||||| || |||||| || |||| ||||||||||| ||||| ||||||||||||| |||||||| | | | |||||||||||||||| |
|
|
| T |
53027870 |
atacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaaaatgatgctgaccgttggatctcatca |
53027771 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaat |
146 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||| |
|
|
| T |
53027770 |
tttggctcagcatgcatctcatcctttgatctaat |
53027736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 35066 - 35204
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35066 |
atacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatctcatca |
35165 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
35166 |
tttggctaagcatgcatctcatcctttgatctaatctga |
35204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 23349098 - 23348960
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23349098 |
atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
23348999 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
23348998 |
tttggctaagcatgcatctcatcctttgatctaatctga |
23348960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 12741687 - 12741829
Alignment:
| Q |
10 |
ttatacttata--tctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctc |
107 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12741687 |
ttatacttatacatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctc |
12741786 |
T |
|
| Q |
108 |
atcatttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
12741787 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
12741829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 18355431 - 18355293
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18355431 |
atacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctcatca |
18355332 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
18355331 |
tttggctaagcatgcatctcatcctttaatctaatctga |
18355293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 10329010 - 10328871
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| || ||||| ||||| |||||| ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
10329010 |
atacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctcatca |
10328911 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattc-tttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
10328910 |
tttggctaagcatgcatctcatccttttgatctaatctga |
10328871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 1616029 - 1615899
Alignment:
| Q |
15 |
cttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcattt |
114 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| || | ||||||||||||||||| |||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
1616029 |
cttatatccaatctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaa-caagggagatcgttggatcgcatcattt |
1615931 |
T |
|
| Q |
115 |
ggctaaacatgcatctcattctttgatctaat |
146 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| |
|
|
| T |
1615930 |
ggctaagcatgcatctcatcctttgatctaat |
1615899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 24454518 - 24454668
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| | || |||| ||||| |||||| ||| ||| || |||||||| |||||||||||||||||| |
|
|
| T |
24454518 |
atacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgcc-aaacaaggagggccgttggatctcatca |
24454616 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctgattgcagactttca |
163 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||| | || ||||||| |
|
|
| T |
24454617 |
tttggcttgacattcatctcatcctttgatctaatctgacttcaaactttca |
24454668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 27413 - 27574
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| ||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27413 |
atacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctcatca |
27511 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctgattgcagactttcattttcccatgcc |
175 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||| | || ||||||| ||||||||||| |
|
|
| T |
27512 |
tttggctaagcatgcatctcatcctttgatctaatttgacttcaaactttca-tttcccatgcc |
27574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 29863479 - 29863341
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29863479 |
atacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
29863380 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
29863379 |
tttggctgagcatgcatctcatcctttgatctaatctga |
29863341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 12506439 - 12506497
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaat |
70 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| |||| ||||| |||||| |
|
|
| T |
12506439 |
atacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat |
12506497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 11752 - 11614
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11752 |
atacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctcatca |
11653 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||| ||| |||||||||||| ||||||| |||||||| |
|
|
| T |
11652 |
tttggttaagcatgcatctcatcctttgatttaatctga |
11614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 657 - 795
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatca |
111 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||||| || ||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
657 |
atacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctcatca |
756 |
T |
|
| Q |
112 |
tttggctaaacatgcatctcattctttgatctaatctga |
150 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
757 |
tttggctaagcatgcatctcatcctttgatctaatctga |
795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 50990911 - 50990983
Alignment:
| Q |
13 |
tacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaatggttttggctccaaa |
85 |
Q |
| |
|
|||||||||||||||||| ||||||||| | || ||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
50990911 |
tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaa |
50990983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 14038 - 13980
Alignment:
| Q |
12 |
atacttatatctaatctttattaacattgttaatgactttacaaactctaaatctaaat |
70 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| |||| ||||| |||||| |
|
|
| T |
14038 |
atacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat |
13980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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