View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18562_low_16 (Length: 238)
Name: NF18562_low_16
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6817251 - 6817030
Alignment:
| Q |
1 |
ttcacgaacttaaccagtttggtgcagttcaatttgtgaactatctatcacagtttggttattttaggtgcagttcaattcggtttttggtctatttaaa |
100 |
Q |
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| T |
6817251 |
ttcacgaacttaaccagtttggtgcagttcaattcgtgaactatctgtcacagtttggttcttttaggtgcagttcaattcggtttttggtctatttaaa |
6817152 |
T |
|
| Q |
101 |
caatcctaaggtccgatttcgttcagattatggtttttcctagaagtaatgattatcagttaataatagcaatctggtacagttcaattcacaaagaatc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6817151 |
caatcctaaggtccgatttcgttcggattatggtttttcctagaagtaatgattatcagttaataatagcaatctggtacagttcaattcacaaagaatc |
6817052 |
T |
|
| Q |
201 |
aagtttggtttgaaaccacagt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6817051 |
aagtttggtttgaaaccacagt |
6817030 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 36854752 - 36854703
Alignment:
| Q |
152 |
attatcagttaataatagcaatctggtacagttcaattcacaaagaatca |
201 |
Q |
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| T |
36854752 |
attatcagttaagaatagcaatttggtacagttcggttcacaaagaatca |
36854703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 51215780 - 51215734
Alignment:
| Q |
152 |
attatcagttaataatagcaatctggtacagttcaattcacaaagaa |
198 |
Q |
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| T |
51215780 |
attatcaattaataatagcaatttggtacaattaaattcacaaagaa |
51215734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 35034062 - 35034111
Alignment:
| Q |
152 |
attatcagttaataatagcaatctggtacagttcaattcacaaagaatca |
201 |
Q |
| |
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|||||||||||| ||||||||| | ||||||||| |||||||||||||| |
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| T |
35034062 |
attatcagttaagaatagcaattttgtacagttcggttcacaaagaatca |
35034111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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