View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18562_low_20 (Length: 233)
Name: NF18562_low_20
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 55269902 - 55269675
Alignment:
| Q |
1 |
gcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgtagtcaaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55269902 |
gcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgtagtcaaccta |
55269803 |
T |
|
| Q |
101 |
gtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatggatggaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55269802 |
gtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatggatggaaaa |
55269703 |
T |
|
| Q |
201 |
ctgtaagttcatttttccctttgcttct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
55269702 |
ctgtaagttcatttttccctttgcttct |
55269675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 55263021 - 55262830
Alignment:
| Q |
18 |
atggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
55263021 |
atggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtctacaagagtgctgatgtagtcaacctagtcacacaagagcttgg |
55262922 |
T |
|
| Q |
118 |
agggaagatcactcggcaaccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatggatggaaaactgtaagtt |
209 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55262921 |
aggggagatcactctgcaaccagggccaattcctggccttaacacaaaggtcacttcctttttagatccagatggatggaaaactgtaagtt |
55262830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 8301029 - 8300857
Alignment:
| Q |
37 |
gtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaa |
136 |
Q |
| |
|
|||| ||| |||| |||||||||| || |||||||| ||||||||||| || |||||||||||| || ||||| ||||||||||||| || ||||| |
|
|
| T |
8301029 |
gtgtatataacaggttgctgttggcaccgatgatgtatacaagagtgccgagttagtcaacctagccactcaagaatttggagggaagattaccaggcaa |
8300930 |
T |
|
| Q |
137 |
ccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatggatggaaaactgtaagtt |
209 |
Q |
| |
|
||||||||||| || ||||| |||||||| || |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
8300929 |
ccagggccaatccctggcctcaacacaaagatcacttctttcttagatccagatggatggaaaactgtgagtt |
8300857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University