View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18562_low_21 (Length: 221)
Name: NF18562_low_21
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 5283788 - 5283601
Alignment:
| Q |
13 |
gtagcaaaggaaagggttgaagagtgttgtggtgcaaagatatttcgggtgagatggtttttatatgaagagagttgagtgcatattggagggtagctga |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5283788 |
gtagtaaaggaaagggttgaagagtgttgtggtgcaaagatatttggggtgagatggtttttatatgaagagagtagagtgcatattggagggtagctga |
5283689 |
T |
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| Q |
113 |
acataacatcacgtgtttgaccaacgaataatatacatacaatggctggctggatgactgctttgtccatgacttgaccatgttggagtt |
202 |
Q |
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| T |
5283688 |
acataatatcacgtgtttgaccaacgaata--atacatacaatggctggctggatgactgctttgtccatgacttgaccatgttggagtt |
5283601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 5290342 - 5290462
Alignment:
| Q |
13 |
gtagcaaaggaaagggttgaagagtgttgtggtgcaaagatatttcgggtgagatggtttttatatgaagagagttgagtgcatattggagggtagctga |
112 |
Q |
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| T |
5290342 |
gtagaaaagaaaagggttgaagtgtgttgtggtgcagaaatgtttgggatgagatggtttttatatgaagagagtagtgtgcatattggagggtagctga |
5290441 |
T |
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| Q |
113 |
acataacatcacgtgtttgac |
133 |
Q |
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| T |
5290442 |
acataacatcacgtgtttgac |
5290462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 5301973 - 5301870
Alignment:
| Q |
13 |
gtagcaaaggaaagggttgaagagtgttgtggtgcaaagatatttcgggtgagatggtttttatatgaagagagttgagtgcatattggagggtagctga |
112 |
Q |
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| T |
5301973 |
gtagaaaagaaaagggttgaagtgtgttgtggtgcagaaatgtttgggatgagatggtttttatatgaagagagtagtgtgcatattggagggtagctga |
5301874 |
T |
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| Q |
113 |
acat |
116 |
Q |
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|||| |
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| T |
5301873 |
acat |
5301870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 5309620 - 5309520
Alignment:
| Q |
13 |
gtagcaaaggaaagggttgaagagtgttgtggtgcaaagatatttcgggtgagatggtttttatatgaagagagttgagtgcatattggagggtagctga |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||| || ||| ||||| | || ||||||||| |||||| |||||| ||| |||||||||||| |
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| T |
5309620 |
gtagtaaaggaaagggttgaagagtgttgtggtgcaaatatgtttgtggtgataagg-ttttatatgttgagagtagagtgc--attagagggtagctga |
5309524 |
T |
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| Q |
113 |
acat |
116 |
Q |
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|||| |
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| T |
5309523 |
acat |
5309520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 5301796 - 5301739
Alignment:
| Q |
145 |
atacatacaatggctggctggatgactgctttgtccatgacttgaccatgttggagtt |
202 |
Q |
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| T |
5301796 |
atacatataatggctggctggctggctgctttgtccattacttgaccctgttggagtt |
5301739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 5314401 - 5314358
Alignment:
| Q |
36 |
gtgttgtggtgcaaagatatttcgggtgagatggtttttatatga |
80 |
Q |
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| T |
5314401 |
gtgttgtggtgcaaagatgttt-gggtgagatggtttttatatga |
5314358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 1504260 - 1504197
Alignment:
| Q |
18 |
aaaggaaagggttgaagagtgttgtggtgcaaagatatttcgggtgagatggtttttatatgaa |
81 |
Q |
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||||||||||| ||||||||||||||||| |||||| ||| | ||||||||||||||||||||| |
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| T |
1504260 |
aaaggaaaggggtgaagagtgttgtggtggaaagatgtttagagtgagatggtttttatatgaa |
1504197 |
T |
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