View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18562_low_3 (Length: 484)
Name: NF18562_low_3
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Original strand, 41085688 - 41086149
Alignment:
| Q |
8 |
gacatcatcatattcatagcattagaatcaggccatagaacatcttgtaccacatcttcatcaacacctagaaacccttcaaactgatcatattcaatcc |
107 |
Q |
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| T |
41085688 |
gacatcatcatattcatagcattagaatcaggccatagaacatcttgtaccacatcttcatcaacacctagaaacccttcaaactgatcatattcaatcc |
41085787 |
T |
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| Q |
108 |
cactcaaactcaactcatgttcacctccataattctgaacctcatcaaaaggtttatgaggctggaccactgcatcattctccgtttcaacgctttccgg |
207 |
Q |
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| T |
41085788 |
cactcaaactcaactcatgttcacctccataattctgaacctcatcaaaaggtttatgaggctggaccactgcatcattctccgtttcaacgctttccgg |
41085887 |
T |
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| Q |
208 |
tgtcgatgacaaattgttaatattgttggaagaagaagacagtccattattattaacctcactctcaatttccaattcctcatcaccatgatgagtacta |
307 |
Q |
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| T |
41085888 |
tgtcgatgacaaattgttaatattgttggaagaagaagacagtccattattattaacctcactctcaatttccaattcctcatcaccatgatgagtacta |
41085987 |
T |
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| Q |
308 |
tttggattttggtttaagaatttggcgaaaacaacagccatatctatatcgcgggaaccattgttttggttttgctgatgatcttcatcgtcagcagagc |
407 |
Q |
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| T |
41085988 |
tttggattttggtttaagaatttggcgaaaacaacagccatatctatatcgcgggaaccattgttttggttttgctgatgatcttcatcgtcagcagagc |
41086087 |
T |
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| Q |
408 |
cataattcgcggaaagacggtcggcatgagaatttctgaccgcctttccacggcggtttttg |
469 |
Q |
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| T |
41086088 |
cataattcgcggaaagacggtcagtctgagaatttctgaccgcctttccacgacggtttttg |
41086149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 23939535 - 23939648
Alignment:
| Q |
239 |
gaagaagacagtccattattattaacctcactctcaatttccaattcctcatcaccatgatgagtactatttggattttggtttaagaatttggcgaaaa |
338 |
Q |
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|||||||||| ||||||| | | ||||| |||||||||| |||| || |||||||||||||||| || ||||||||||||| | |||||| |||| |
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| T |
23939535 |
gaagaagacatctcattattgtgagcctcaatctcaatttctaatttcttgtcaccatgatgagtac---ttagattttggtttaaaattttggcaaaaa |
23939631 |
T |
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| Q |
339 |
caacagccatatctata |
355 |
Q |
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| T |
23939632 |
caagagccatgtctata |
23939648 |
T |
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