View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18562_low_5 (Length: 404)
Name: NF18562_low_5
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 1757394 - 1757010
Alignment:
| Q |
1 |
acctagatttttatcaacttacaagcttaacaattatttcaaaccctaatatttaaacttataaataatttgctttatttatctacttactcatctaata |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1757394 |
acctagatttttctcaacttacaagcttaacaattatttcaaatcctaatatttaaacttataaataatttgctttatttatctacttactcatccaata |
1757295 |
T |
|
| Q |
101 |
attctgttcttctctgcaaaaaggaaatttgcaatatatttttcattgatgatcattaaatcatgatagttacatttaactttctattttcttgcaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1757294 |
attctgttcttctctgcaaaaaggaaatttgcaatatatttttcattgatgatcattaaatcatgatagttacatttaactttctattttcttgcaacaa |
1757195 |
T |
|
| Q |
201 |
cggcgattcattttatatttagaatgaatgtattttccattttattgtaaagagtttctaaactgaacatttagcaaatagatgcttcaatttccatact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1757194 |
cggcgattcattttatatttagaatgaatgtattttccattttattgtaaagagattctaaactgaacatttagcaaatagatgcttcaatttccagact |
1757095 |
T |
|
| Q |
301 |
gatattaaaggggaatagatagagatatacggtaatagtgtcaataaatttctgattcaaatgaaatttttacatccaagtatga |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1757094 |
gatattaaaggggaatagatagagatatacggtaatagtgtcaataaatttctgattcaaatgaattttttacatccaagtatga |
1757010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 27500112 - 27500209
Alignment:
| Q |
288 |
caatttccatactgatattaaaggggaatagatagagatatacggtaatagtgtcaataaatttctgattcaaatgaaatttttacatccaagtatga |
385 |
Q |
| |
|
|||||| |||| ||||||| ||||| || | ||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||| ||||||||||||||| |
|
|
| T |
27500112 |
caattttcatattgatatttaagggaaagatatagagaaatacggtaatagtgttaataaatttctcattcagatgaagtttatacatccaagtatga |
27500209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University